Linepithema humile (Argentine ant): 105673828
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Entry
105673828 CDS
T04898
Name
(RefSeq) uncharacterized protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105673828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lhu03041
]
105673828
03009 Ribosome biogenesis [BR:
lhu03009
]
105673828
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105673828
Spliceosome [BR:
lhu03041
]
Complex A
U1 snRNP components
U1 related factors
105673828
Complex B
105673828
Ribosome biogenesis [BR:
lhu03009
]
Eukaryotic type
Pre-60S particles
Helicases
105673828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
DUF6505
Motif
Other DBs
NCBI-GeneID:
105673828
NCBI-ProteinID:
XP_012225189
LinkDB
All DBs
Position
8:11663087..11678377
Genome browser
AA seq
702 aa
AA seq
DB search
MYNGYSQYNSYRPKENRNHLHGNRSGGNGGTYWNSQQQTQKDHNAKKQNHRKTPGDLLKK
PIWDSKSMPSITKNLYAPHKNVLRRTPDEIKKYHTGKEITVKGNSTPSPIQTFEESNFPD
YVMEEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVHINHQPRLS
RGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLERGVEICIA
TPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWP
KEVQALAEDFLTDYIQINIGSLTLAANHNIRQIIEICQEHEKETKLSQLLREIGTERGSK
MIIFVETKKKVDDITKAIKREGWSAISIHGDKSQPERDYVLTEFRNGKTMILVATDVAAR
GLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKELIAVLEEA
GQSINPQLIDMANSVRNQYGKGRQRWSHGRGNKDNNTHGSPRNNISPTINNWQNQHIPTQ
TNQHGHHNQVPQEKTVARHQRNNGYQANRPNNYQQSYLRQSTVGYQNGYQATNNACQPTH
QPTSAPKYQNRTGYQNNRFQNRQNGFSGGQNGPNVYSMPPPFIMPSGGHADSGIQNLVNN
KFFQTNRPPPNAGACAYQSMGYGQFQAVPPYGYPYPPTPVQQ
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacggatactcgcagtacaattcttataggcctaaggagaatcgaaatcacctt
catggcaatcgtagtggaggaaatggtggaacttattggaacagtcaacaacaaacccag
aaagaccacaacgcaaagaagcaaaatcataggaagactccaggagatttattgaaaaag
cccatttgggactcaaaatcaatgccatcgataacaaagaacttgtatgctcctcataaa
aatgttcttagaagaactcctgatgaaatcaagaagtatcatacaggcaaagagatcact
gtcaaaggcaacagtacaccatctccaatccagacttttgaagaaagcaattttcccgac
tatgtaatggaagaaatcaagaagcaaggatttgctgaacctactgcaattcaagctcaa
ggttggccaattgcacttagtggacgagatctcgttggaattgcccaaactggctctgga
aaaacattagcatatatccttcccgctacagtgcacatcaaccatcaacctcgcctcagc
cgtggcgatggtccaattgttctcattctcgctcctactcgtgaattggctcaacaaatt
caaacagtcgcacgtgactttggctcatcttcatgcattcgcaacacctgcatctttggt
ggttcaccgaaggggcctcaagctcgcgatcttgaacgtggggtggaaatttgcatcgcg
acacctggtagattaatcgatttccttgaaaagggcaccacaaatctacgtagatgcact
tatctagtattagacgaagctgatcgaatgttggatatgggctttgagccgcagatccgc
aagatcatcgagcagatccgacccgaccgacaagtgctcatgtggtccgctacttggccc
aaagaagtgcaggctcttgccgaagattttctcactgattacatccagattaatatcggc
tctctgaccttggctgcaaatcacaacatccgacagatcatcgagatatgccaggagcat
gaaaaggaaaccaaactatcgcaattgttgcgtgaaattggaaccgaacgtggcagcaag
atgattatcttcgtggagacaaagaagaaagtggatgacatcacgaaggcaatcaaacgt
gaaggctggtcagctatatcaatccacggcgacaaatcacagccggaacgagattatgtg
ttaacagaatttcgtaatggcaaaacgatgattttggtcgcgactgacgtggcggcgcgc
ggcttagacgtcgaagatgttaagtacgtgatcaatttcgactaccccaacagctccgag
gactatatccacaggatcggcagaactggtcgctgccagagcgcgggcactgcctatgct
tatttcacgccgaataacgcaagacaggcgaaggaattgatcgctgtgctggaggaagct
ggtcaatctataaatccacaactgatcgacatggcaaattctgtcaggaaccaatatggc
aaaggacggcaacgatggagccacggacgtggcaataaggataacaacacacacggaagt
cccagaaacaatatcagcccaacgataaacaactggcaaaatcaacacataccgacgcag
acaaatcagcatggacatcataatcaagtgccccaggagaaaaccgtggctcgtcatcaa
cgcaacaacggttatcaagctaatcgcccgaataattatcaacaatcttacttgcgacag
tccaccgtcggctaccagaacggctaccaggcgactaataacgcgtgccaacctacacat
caacccaccagcgcgcccaagtatcaaaacagaactggataccagaataatcgattccag
aatcggcagaatggttttagcggtggacagaacggacccaatgtctattcgatgccgcca
ccctttatcatgccgtccggcggacacgcagattctggtattcagaatctggtaaacaac
aaattcttccagacaaaccgcccaccaccgaatgctggcgcttgcgcgtatcagtcgatg
gggtacggtcagttccaagcggtaccgccgtatggatatccgtatcctcccacacccgtg
cagcagtga
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