Linepithema humile (Argentine ant): 105673936
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Entry
105673936 CDS
T04898
Symbol
Rhau
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105673936 (Rhau)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105673936 (Rhau)
03012 Translation factors [BR:
lhu03012
]
105673936 (Rhau)
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105673936 (Rhau)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105673936 (Rhau)
Translation factors [BR:
lhu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105673936 (Rhau)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_N
HA2_C
AAA_22
ResIII
nSTAND3
ATPase
AAA_14
AAA_19
NPHP3_N
ATPase_2
NB-ARC
RsgA_GTPase
NACHT
ABC_tran
PhoH
DUF402
Motif
Other DBs
NCBI-GeneID:
105673936
NCBI-ProteinID:
XP_012225359
LinkDB
All DBs
Position
2:4861329..4866293
Genome browser
AA seq
971 aa
AA seq
DB search
MSRRHGPRGKSHFFTRHSREEQQSQSSESGHGGAYSRRPPGLKGKEIGLYYRNKNREKAQ
KKNTQVLKLLPQVEHRIKSILNDSKIFYNVLPDKRSSFEHSNNYDYISDSQFKRKFLEII
HGDIEHNLAKAMIMESKLQKNSEMDRTLLNEYKEKQTQHDYLNMLKFRMKLPTYHKKLEI
LKLIEDNQVIVISGETGCGKTTQVAQFILDDQLEAGNGSITQIICTQPRRISAISVAERV
AAERAERLGKSVGYQIRLEKIPSREQGSILFCTTGILLQIMKTDPALKSFSHVILDEIHE
RTIESDFIITLLKQILPKRPDLKVILMSATLNSESFSKYYDKCPMIHIPGITYPVQEFYL
EDILSFTGFKFPEPPPEPTGYRKHLKRYKEQQHKHETFLDFILPYVRQLRTEMKYAKHVI
DQLRNPNSENLSLELIEKLVRYICNTKGPGAILIFLPGIMDISKLNRMLLESGCYPSYKY
IIYPLHSRMPTVDQKLIFKEPPHGVRKIIIATSIAETSITIEDVVYVINCGKTKLTRFDV
NKNLQTLEPEWVSLANAKQRRGRAGRVKSGECYHLYSKAREMTFDQYQLPEILRTRLEQI
ILQIKILQLGKVKKFLVNIMDPPDMKTIDLSLDLLRTLNALDKDEHLTPLGYHLAHLPLD
PRTGKMILWASLFSCAEPVFAIAASLTFKDAFYCPLGKEEEANRKKLELGMGQYSDHIVL
AEALRRFENAHRRGNAGQFCREYFLSFNTLKLLSEMKTQFAQYLCEMKFLDSENPSDRNA
NRNSNNIALIKAIVCAGLYPNIAVVRRSTKQGVICWTPEDGCVRTHPSSINNKVEKFPNR
YLTYFTKQRSTAIYLHDTTCISVPILLFAGPTISTRREKGKCVINNINFSENIICEPETV
EVIQELQYALNTLLEYKITHPATVSWSTFEGNLLNAIIELVSQKDEEMGFNDVIGNEDNN
IDEEFTDDNFD
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacgacacggacctagaggaaagtcacatttcttcacacgacatagtagagaa
gaacaacaaagtcaatcatctgaatctggacatggaggtgcttattcacgaagacctcct
ggacttaagggcaaagaaataggattgtattacagaaacaaaaatagagagaaagcacaa
aagaaaaatacacaggttctcaaattattgcctcaagtggagcacagaataaaaagcatt
ttgaatgattcaaagatcttttacaatgtactacccgataaaagatctagttttgaacat
agcaacaattatgattatatttctgattctcaatttaaaagaaaatttttagaaattata
catggtgatatagaacataatcttgccaaagctatgattatggaatcaaaattgcaaaaa
aacagcgagatggacagaacattattaaatgaatataaagaaaaacaaactcaacatgat
tatttaaatatgttaaaatttcggatgaagttacccacatatcataaaaaattagagata
ttaaaacttatagaagataaccaagttattgttatcagcggagaaactggttgtggcaaa
accacacaagttgcacaatttatactagatgatcagttggaagctggaaatggtagcatt
acgcaaataatttgcacgcaacctcgaagaatttctgccatttctgttgccgaacgtgta
gctgcagaaagagcagaaagacttggaaaatccgttggctatcaaatacggcttgaaaag
attccatcacgagagcaaggaagcatactgttttgtactactggtatattattacaaatt
atgaaaactgatccagcgctaaaaagtttttcccatgtaatattagatgaaattcatgaa
cgcacgatagaaagtgatttcatcattacattattaaaacaaattcttccgaaaagacca
gatttaaaagtcatcttaatgagtgcaacattaaattctgaaagtttttcaaaatattat
gacaaatgtccaatgatacatataccaggaatcacctatccagtacaagaattttattta
gaagatattttatcatttacaggatttaaatttcctgagccaccacccgagcccactggt
tacagaaaacatttaaaaagatacaaagaacaacaacataaacatgaaacgtttttagat
tttatactaccgtatgttagacaacttagaactgagatgaaatacgcaaaacacgttatt
gatcaattacgcaatccgaatagtgaaaatctttcattggaactcatagaaaaattagtt
agatatatatgtaatacaaaaggtccaggagctattcttatttttctacctggtataatg
gatatatcaaaactaaatagaatgttgttagaatctggatgttacccaagctataaatac
atcatttatcctcttcattcacgcatgcctacagttgatcagaaacttatatttaaagaa
ccacctcatggagttcgtaaaatcattattgctacttcaattgctgagacgtcaataact
atagaagatgtagtatatgtaataaactgtggaaaaacaaaacttacaagattcgacgta
aataaaaatcttcagaccttagaacctgaatgggtatctttagcgaatgctaaacaaaga
cgcggtcgagccggcagagttaagagtggagaatgttatcatttatattcaaaagctcga
gaaatgacgtttgatcagtatcaattgccagaaatattaagaacacgcttggaacagata
attttgcaaataaaaattttgcaattaggaaaagtaaaaaagttcctagttaatattatg
gatccgccagatatgaaaaccattgatctgtctctcgatttacttcgaacacttaacgct
ctcgacaaagatgaacatttgactcctttaggttatcatttagcacatttaccgcttgat
cctagaacaggcaaaatgattctttgggcttcactgttctcttgtgccgagccagtattt
gctattgcagctagtctcacatttaaagatgctttctactgtccattggggaaagaggaa
gaagctaatagaaagaaattagaactcggtatgggacagtatagtgatcatattgttctt
gcggaagctttacgaagatttgaaaatgcacatcgaagaggaaacgctggccaattttgt
cgagagtatttcctgtcttttaatacactgaagcttctctctgaaatgaagactcaattt
gcacaatatttatgcgaaatgaaatttctggacagcgaaaatccgagtgatagaaatgct
aacagaaattcgaataatatagcgttaataaaagctattgtctgtgcgggattatatcct
aacattgctgttgtaagacgatctactaaacaaggagtgatttgttggacgccggaagat
ggttgtgtacgtacacatccgtcgagtataaataacaaagttgaaaaatttcccaaccga
tatttgacatatttcacaaaacaacgttcgaccgccatatacttacacgatactacatgt
ataagtgtaccaattttgttatttgctggaccgactatatctacaagaagagaaaaaggg
aaatgtgtaattaataatatcaacttctctgaaaatattatttgtgaaccagaaactgta
gaagtgatacaggaactccaatatgctctgaatactttattggaatataagattacacat
ccggcaacagtatcttggtcaacatttgaaggcaacttattaaacgcaatcattgaatta
gtatcacaaaaagatgaagaaatgggttttaatgatgttattggcaatgaagataacaat
attgatgaagagtttactgatgataatttcgattga
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