Linepithema humile (Argentine ant): 105674004
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Entry
105674004 CDS
T04898
Symbol
fand
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105674004 (fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105674004 (fand)
03041 Spliceosome [BR:
lhu03041
]
105674004 (fand)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105674004 (fand)
Spliceosome [BR:
lhu03041
]
Complex B
Other components
Prp19-related factors
105674004 (fand)
Complex C
105674004 (fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
TPR_2
Suf
TPR_8
TPR_15
TPR_12
Mad3_BUB1_I
RPN7
TPR_10
DHR-2_Lobe_A
ARM_TT21_C
NRDE-2
PPR
BNIP2
ATG1-like_MIT2
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
105674004
NCBI-ProteinID:
XP_012225458
LinkDB
All DBs
Position
2:complement(4270606..4274929)
Genome browser
AA seq
858 aa
AA seq
DB search
MLERKDDEGNLYAFNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTKSKNLNVVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCITDPLYDDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
CYITQTRQVFDRSLRALPITQHHRIWPLYIDFLKKHNVYETAVRVFRRYLKLSPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLKKLMEEAAHNPTQEEIDIKLELRLTRLEHLMERRLLLLNSVLLRQNPHNVSEWHKR
VKLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEKATH
VPYTKVDDLASVWCEWAEMEIRHNNSKEALKLMHRATAMPARKVAYHDETETVQMRLYKS
LKVWSMYADLEEMCGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGTKLERARDLFEQCLEHCPSKYAKALYLLYAKLE
EDHGLARHAMSVYERATNAVLPEEKFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDEN
TREMCLRFSELETKLGEVDRARAIYAHCSQICDPRVTSNFWQVWKEFEVRHGNEDTMREM
LRIKRSVQAMYNTQVNMMSAQMLNNASNQVSDVPVDAMRLLDSKVASNTDNVADLKGGIK
FVRSVTEKDGKSESRVNNPDEIDIDMNDDDDDDDDENENENESENENDAEVEEDVPIEKQ
IIPSQVFGSLKTAEVEDE
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgttagaacgcaaagatgacgaaggaaatttatacgcctttaatgaggaagatttacca
tacgaagaagaaattttacgaaatccatattcagtgaaacattggcaacgctacattgat
caccttaaaaatacaaaaagtaagaatttaaatgtggtatacgaacgagcattgaaagaa
ttaccaggcagttacaaactgtggtataattatcttcgacaacgtgtcagtcaattaaag
ggtcgatgtataacagatccattatatgatgatgttaataatgctttcgaacgtgcattg
gtatttatgcataaaatgccacgtatttggatggattattgtacactaatgactgaacaa
tgttatataacacaaacacgtcaggtgtttgatcgttctctgagagcactccctattact
cagcatcatcgtatatggcctttatatattgatttcttaaaaaaacacaatgtttatgag
actgctgtcagagtctttagaagatacctaaagttatcaccggaagatacagaagaatac
atagaatatctgatatcgattggaagacttgacgaagctgctgtaaaactcgcacagatt
gtcaatcaggacgattttgtatcaaagcatggaaagtccaatcatcaactatggaatgaa
ttatgcgacttgatatcaaaaaatccttctaaaataaagtctctgaatgtagatgctatt
atcagaggtggtttaagacgttatacagatcaactaggacctttatggaattcattagca
gattattatgtgcgaagtggtctctttgagagggcgagagatatttatgaagaagctata
caaactgttactaccgtcagagattttacacaagtttttgatgcttatgcacaattcgag
gaactcagccttaaaaagctaatggaagaagcagcacataaccctactcaggaagaaatt
gatataaaattagaattgagattgacacgattggaacatcttatggaaagaagactattg
ttactcaattctgtattgttgcgacaaaatccacataatgtatctgaatggcacaaaaga
gttaaactttatgaaggacaaccacatgagataattaacacatacacagaagctgtgcag
acagtgcaaccacagttggcagttggtaaactacatacattgtgggttgcatttggcaaa
ttttatgaggaaaacgggcaaatagaagatgctagagtagtatttgagaaggcaactcat
gttccgtataccaaagtggatgatcttgcttcagtgtggtgtgagtgggcagaaatggaa
ataagacacaataattctaaagaggctttaaaactcatgcatcgtgccactgcaatgcca
gctagaaaagtggcatatcatgatgaaacagaaacagtgcaaatgagattatacaagtcg
ttaaaagtatggtctatgtatgcggatttagaagaaatgtgtggaacatttaagacctgc
aaagcggtatatgacaaaataatcgacttgaaaattgctacaccacaaatcatcattaat
tatggactatttttggaggaaaacaactactttgaggaagcatttagggcatatgaaaaa
ggtatcgcattatttaaatggcccaacgtttatgatatttggaatacgtatctgacaaaa
tttttgaaacgttatggcggcacaaaactagaacgtgccagggatctcttcgaacaatgt
ttagaacattgcccgtccaagtatgctaaagctttatatttgttatacgcaaaactagaa
gaggaccatggcttagcaagacatgctatgtctgtgtatgaacgtgcaacaaatgctgtc
cttccggaagagaaatttgatatgtttaacatatatattaaaaaagctgcagacatatat
ggagtaccgaaaactcgacagatatatgaaaaagccatagaagttctaaatgatgaaaat
actagggaaatgtgtttacgattttcagagttggagacgaagttaggagaagtagataga
gcgagagcaatatatgcgcattgtagccaaatatgtgacccaagggttacatcaaatttc
tggcaagtttggaaagagtttgaagttagacatggaaatgaggataccatgcgtgaaatg
ttacgaattaaacgtagcgtgcaagctatgtataatactcaagtaaatatgatgtctgca
caaatgttgaataatgcatccaatcaagtgtcagatgttccagtagatgctatgcgcttg
ttagatagtaaagtcgcatcgaatacagataatgttgccgacctcaaaggaggtattaaa
tttgtacgtagcgtaacagaaaaagatggtaaatcagaatcgcgtgtaaataatcccgat
gagattgatattgatatgaatgatgatgatgatgatgatgatgatgaaaatgaaaatgaa
aatgaaagtgaaaacgaaaatgatgcagaagtagaagaagatgtgccgattgaaaaacaa
attataccttcacaagtatttggtagtctaaaaacagccgaagttgaagatgaataa
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