Linepithema humile (Argentine ant): 105674348
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Entry
105674348 CDS
T04898
Symbol
vkg
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu04382
Cornified envelope formation
lhu04512
ECM-receptor interaction
lhu04518
Integrin signaling
lhu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105674348 (vkg)
04518 Integrin signaling
105674348 (vkg)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105674348 (vkg)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105674348 (vkg)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lhu04147
]
105674348 (vkg)
00536 Glycosaminoglycan binding proteins [BR:
lhu00536
]
105674348 (vkg)
Exosome [BR:
lhu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105674348 (vkg)
Glycosaminoglycan binding proteins [BR:
lhu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105674348 (vkg)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105674348
NCBI-ProteinID:
XP_012226019
LinkDB
All DBs
Position
1:complement(557913..605805)
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AA seq
1843 aa
AA seq
DB search
MRPRAATTSTTTGDASRGISRPISLVLRITCVLALLVLATWIPVVEAVICRDSYKCNCTG
VKGQQGFPGIPGPQGTEGLPGEIGPDGPPGPKGEKGAGGEIGGTGEKGYRGEDGIRGFVG
VPGLSGNPGILGVVGPDGLDGCNGTDGRGGAPGMPGVFGPRGSQGPTGDYGPPGEPGDGG
INSVGAKGIRGNPGIDGQEGYRGQQGITGETGYPGETGDFGWPGAPGLPGLQGDRGDAVY
GVKGQPGEQGDRGEPGSPGKDEYKKNPKSTPVKGQPGPKGVRGNYGNRGRKGELGTKGPQ
GRPGFLGIKGVKGEQGDDGPRGKQGVEGPAGPAGEKGEKGAPGFSGLPGADGVDGELGEE
GNRGQPGRQGAEGEPGRYIPELDEIIAGNIGIQGDLGPPGEAGEAGTPGLPGKVGFIGPP
GSPGPPGIFGLPGAKGSSIKGEQGDDGLSGSMGPQGPPGLSGLPGIIGAKGFPGVTISGP
PGIDGTPGRPGLIGPPGDRGDPGPPGEKGFPGKGIRIQGPAGERGLPGTPGIPGLDGWPG
LSGSKGFKGFRGDDCGVCAPGLPGEKGERGESGLDGYPGASGFPGLPGPRGLKGIQGKRG
LQGPAGLDGDSGRSGIAGIQGPKGEPGRIFFPPGEKYISPPGDIGEKGLPGIEGLRGPRG
KSGAIGDTGVPGPKGEKGEHGAPGLSGRDGSPGWDGIPGEKGEDASIPIEFLRGDPGYPG
NPGIKGIQGDLGNKGEPGLSAEFTAESRGDKGYKGVRGAPGESGFKGFQGHPGDEGLPGL
PGEAGSPGISLQGSAGLKGYPGMPGDQGLRGSPGSPGSQGPVGFPGRVGNKGERGDPGSN
LTYGEIGERGWHGPKGDFGDAGPRGNPGRPGIDGPKGVRGAKGAFGYEGLPGLQGAKGQH
GDSIQGDRGFPGILGQPGMPGRIGDVGVRGPDGPSGFDGMKGLKGEIGFIGRRGDDGDTG
LQGYQGMHGIQGLPGAPGEKGGLGDIGEPGPIGWPGANGIEGAPGPKGESGDVGIPGTPG
VRGPPGFKGRLGDIGIEGFPGAPGENSFSGPQGEIGEPGFMGEIGPPGLTGFDGRPGLPG
EPGVATDGFNGLQGQPGDAGFDGFDGIDGLKGEIGDMGPDGFKGERGNSGFPGRPGAPGI
SGRYGAKGERGPIGDTGFEGLKGKRGLDGDPGIMGRPGMPGEPGVRGPPGILGAPGPKGQ
VGEPGLPSYAFAGKGDSGNRGHDGFPGPKGQSGEPGYIGLPGRKGQIGDRGYPGSVGFTG
LPGFPGLPGDQGPRGAPGLADEFAEPGEPGRVGLDGLPGLPGRPGQKGAPGEYGLNGPKG
ISGDIGHSIRGPKGTLGDAGPRGFIGFPGAPGMEGMPGFPGARGSKGDRGEPGVSAISAK
GQPGEPGWHGLDGRPGLKGIKGESGLPGIDGLPGSKGERGEPGESGPSGVPGPTGPQGPK
GEPGINPFPPFPRPGHRGDTGALGLPGFPGLQGMMGEPGKDGLPGRQGERGILGIPGPQG
PDGKDGPPGYQGPSGTTGRQGPPGFPGAPGAPAPNGIGPRNRGFYFARHSQSEMIPQCPR
NTVKIWEGFSLLHTMGNGRAYAQDLGAAGSCIRKFSVMPFLFCNLNNVCDYANRNDYSYW
LSTTEPMPMMMTPIPSPEVGRYISRCSVCEAPTRVIAVHSQSMAIPECPGGWEEIWVGYS
FLMHRDAGADGGGQSLVSPGSCLEEFRIRPFIECRGLGTCNFFSTATSYWLATIRDEEMF
RKPRQQTLKADHTSRVSRCTVCLRRRVTDESHSRGAFRQLTNEQTPNNVYYARPRFPPNY
QLLRTPSRGRYSNYRGVSPQHRRRNRLRGRPDERPTESPNFIE
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctagggccgcgacgacgtcgacaactaccggcgacgcgagtcgcggcatctcg
cggccgatctcgctcgtcctgcgaatcacctgcgtccttgccctactggtgctcgccacg
tggataccggtcgtcgaggctgtgatttgcagagactcgtacaaatgcaattgtaccgga
gtgaaagggcaacaaggattccctgggataccagggcctcaaggaacagaaggacttcca
ggtgagattggacccgatggacctcccggacctaaaggcgaaaagggagcgggaggggaa
attggaggtaccggagagaagggctaccgaggtgaagatggtatacgaggatttgtggga
gtcccaggactttccggtaatccgggaatactcggagtggtgggtccggatggactggat
ggatgcaacggaaccgacggtcgtggcggtgcaccgggcatgcctggagttttcgggcca
cgtggttcacaaggacctacgggagattatggccccccaggagagcctggtgatggaggc
atcaactcggtcggcgccaaaggaattcgcggaaatcctggtatcgacggacaggagggt
tatcgaggacagcaggggatcactggtgaaacgggttatccaggagagacaggcgacttt
ggttggccaggtgctcctggattgccaggcctgcaaggtgatcgcggtgacgccgtgtat
ggtgtgaagggtcaacctggtgagcagggagacagaggagagcctggatcgccgggtaag
gacgaatataaaaaaaatccaaagtcgacgcctgtgaaaggtcagccggggccgaaaggt
gtaaggggcaattatggcaatcgaggtcgcaaaggagagttgggcaccaaaggaccacag
ggtcgaccgggtttcttgggtatcaaaggtgtgaaaggtgaacaaggtgacgatggacca
agaggtaagcaaggtgtcgagggcccagcaggcccggctggtgagaagggagagaaagga
gctccaggattctctgggctgcccggtgcggatggtgtcgatggagaactaggagaggaa
ggaaatcgcggtcagcctggtagacaaggtgctgagggagaacctggacgatatatccca
gagcttgatgagataatcgccggaaacatcggaatccaaggagatcttggtccacctggt
gaggctggtgaagcaggaacacctggtctgccaggaaaggtcggttttataggaccgcca
gggtcaccaggacctccaggtatttttggtttgccaggagcgaaaggatcatccataaaa
ggagaacaaggagatgacggcttatcgggatccatgggacctcaaggacctcccggacta
tcaggtttacccggaattataggagccaaagggttcccaggtgtgacgataagtggtccg
ccgggaatagacggcactccgggtcgacctggattgataggtccaccgggcgatcgcggt
gatcctggtcctccaggagaaaaaggtttccccggcaaaggtataagaattcagggacca
gcgggagagcgaggtctgcctggaacgccgggtattcctggtctcgatggctggcctggt
ttgtccggcagcaagggtttcaaaggttttcgaggagacgattgcggcgtgtgtgcacca
ggtttacctggtgagaaaggagaacgcggtgaatctggtttggacggatatcccggagct
tcaggattcccaggattacctggtcctcgaggattgaagggaatacaaggaaaacgaggt
ctacaaggaccggctggacttgatggcgacagtgggaggtctggaattgcgggaatacaa
ggaccgaaaggtgaaccgggaagaatattctttccgccgggcgaaaagtacataagtccg
ccaggcgacatcggtgaaaaaggattaccgggcattgaaggacttcgaggtccgcgagga
aagtcaggtgccatcggtgacacaggtgtaccggggccgaaaggagaaaagggtgaacac
ggtgctcctggattgtcaggaagggatggttcaccgggatgggacggtattcctggcgaa
aaaggcgaggatgcttcgataccaatcgagttcttgcgtggagatccgggatatccggga
aatccgggaatcaaaggaatacaaggagatttgggtaacaaaggagaacctgggttgtct
gcggaattcaccgcagaaagtaggggtgacaagggttacaaaggtgtcagaggagctccc
ggtgaatctggtttcaaaggattccaaggtcatcctggcgacgaaggtctaccaggattg
cctggcgaagctggctccccgggtatttcgcttcaaggttccgcaggcctaaagggatac
cctggaatgccaggagatcaaggacttcgtggctcgccaggttcacctggatcgcagggg
ccagtaggtttcccgggtcgcgtgggcaacaaaggtgaacgaggagatccaggctcaaat
ctaacttacggcgaaattggagagcgcggatggcacggaccgaagggtgacttcggtgac
gctggtcctcgaggaaaccctggacgaccaggaatagatggtccgaagggtgttagaggc
gctaaaggagcatttggttacgagggtttgcctggacttcaaggagcgaaaggtcaacat
ggagatagtatacaaggtgatcgaggtttcccaggtatactcggccaacctgggatgccc
ggaagaattggagacgttggtgtgcgtggtcctgatggtccttccggctttgacggaatg
aagggcttgaagggcgaaatcggtttcatcggacggcgcggcgacgatggcgacacagga
ctccaggggtaccagggtatgcatggtatacaaggtctaccgggtgctccgggagaaaaa
ggaggactcggcgatatcggggagccgggaccaatcggctggcccggtgctaacggtata
gaaggagcgcctggccctaaaggagaatcgggagacgtcggaatccccgggacaccggga
gtaagaggaccacccggattcaaaggtcggctcggtgatatcggtatcgaaggttttccg
ggagctcctggcgagaactctttcagcggtcctcagggtgagatcggagaacctggtttt
atgggagagatcggaccgcccggtttgactggattcgacggacggccgggattgccggga
gagccgggagtggccactgatggtttcaatggtttgcaaggacagccaggtgacgccgga
tttgatggattcgatggtatcgatggcttgaagggagaaatcggtgatatgggtcccgat
ggatttaaaggcgagcgaggcaattctggtttcccgggaaggccaggcgcgcctggaata
tccggaagatacggtgcgaaaggcgaaagaggtccgattggagacactggattcgaggga
ctgaaaggaaaacgcggtctcgatggcgatccgggtatcatgggcagaccaggaatgccg
ggtgagccgggtgtgagaggacctccgggtatcctgggtgcccccggaccaaagggtcaa
gtaggcgaacctggtttaccgtcttacgcattcgcggggaagggtgatagcggtaatcgc
ggtcatgatggattccccggtccaaaaggacaatcgggtgaaccaggatacatcggatta
cccggtcgtaagggtcaaattggagacagaggatatccaggttccgtcggtttcacagga
ttacccggtttccccggtttgccaggcgatcaaggacctcgcggagctccaggcttggct
gatgaatttgccgaaccaggtgaacccggtcgcgttggtctggacggtttgcctggcctt
ccaggacgtccgggacagaagggagctcctggtgaatatggtctgaacggacctaaagga
atctctggtgacataggtcacagcattcgcggtcctaaaggaaccttaggagacgcaggt
cccagaggattcattggcttcccgggcgcaccaggtatggaaggaatgccaggcttcccc
ggagcgcgaggttcaaaaggtgatcgtggagaaccaggagtatcggcgatcagcgcgaaa
ggacagcctggtgaacccggctggcatggactggatggccgaccaggtctaaagggaata
aaaggtgaatctggtttacccggcatcgacggattgccaggatcgaaaggagaaagggga
gaacctggcgagtctggcccgtctggcgttcctggtcctacaggaccgcaggggccgaaa
ggagaacccggtataaatcctttcccacctttcccgagaccaggacatcgcggtgatacg
ggagctctcggattaccaggtttccctggactgcagggaatgatgggtgagcctggcaag
gatggtctgcctggacgacagggtgaaagaggtatactcggtatccctggaccgcaagga
ccggacggtaaagacgggcctcccggatatcaaggaccttccggaacaactggacgccaa
ggaccaccaggattccccggcgcacctggtgcacctgcgccgaatggaatcggtccgaga
aaccgaggtttttacttcgctcgtcactcgcagtccgaaatgataccgcagtgtccgagg
aacaccgtaaagatttgggaaggattctctctgttgcacactatgggtaatggacgagcc
tacgcgcaggatctcggtgctgctggcagctgcatcaggaaattctccgttatgcccttc
ctattctgtaacttgaacaacgtgtgcgattatgccaatcgtaacgactatagctattgg
ctcagcacgaccgagcctatgccgatgatgatgacaccgataccgagtccggaagttggc
agatatatatcgagatgctccgtgtgcgaggcgccgaccagagtaatagctgtccacagc
caatccatggcgatacctgaatgtccaggtggctgggaggaaatctgggtcggatatagt
ttcctcatgcatagagacgcaggcgctgacggcggcggccagtctctagtctcgcccggg
tcctgcttggaggaattccgcattagaccgtttatcgagtgtcgcggtctcggcacttgc
aatttcttctccacggcaacatcgtactggttggcgactatccgcgacgaggagatgttc
cgcaaaccgcggcagcagacgctcaaagctgaccatacgtcgcgggtgagtcgctgcacc
gtgtgcctccgcagacgtgtcaccgacgaatcccacagcagaggtgcgttcaggcagtta
accaacgaacagaccccgaacaacgtctactatgcgcggccccgctttccgcctaactac
caactcctcagaacgcccagtcggggaagatattccaactacagaggcgtatcccctcag
catcgcagaagaaatcgcctgcgcggcagacccgacgaacgaccgacagagtcgcctaat
ttcatcgaatag
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