Linepithema humile (Argentine ant): 105674410
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Entry
105674410 CDS
T04898
Symbol
Polr2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03020
RNA polymerase
lhu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105674410 (Polr2B)
09124 Replication and repair
03420 Nucleotide excision repair
105674410 (Polr2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhu03021
]
105674410 (Polr2B)
03400 DNA repair and recombination proteins [BR:
lhu03400
]
105674410 (Polr2B)
Enzymes [BR:
lhu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105674410 (Polr2B)
Transcription machinery [BR:
lhu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105674410 (Polr2B)
DNA repair and recombination proteins [BR:
lhu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105674410 (Polr2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
105674410
NCBI-ProteinID:
XP_012226118
LinkDB
All DBs
Position
1:3900660..3906051
Genome browser
AA seq
1178 aa
AA seq
DB search
MSNIFGLEDDQYDDEDAEEISSKLWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQR
IVEDSPQIDLQAEAQHTTGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRN
LTYSAPLYVDITKTIVKDGEDPVETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNEC
PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWI
NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEM
MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC
ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL
YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS
TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ
PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII
VSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELV
GSGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDH
NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGI
NSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKESESKKIGDQEEQFEKPSRLT
CQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFL
RNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF
SCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISTLLQ
EYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPME
GRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE
CKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMIH
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatatatttggtcttgaagatgatcaatatgacgatgaagatgcggaggaaatt
tcgtcgaaactttggcaggaagcctgttggatccttattaacgcgtactttgacgaaaaa
ggtcttgtacgacagcagcttgatagtttcgacgaattcatcgaaatgtccgtccaacgt
atagtagaagattcgccgcaaattgatttgcaagcagaggctcaacacactacaggcgaa
atagagaaccctgtgagacatttgttgaaatttgagcaaatttatttatcgaagccgaca
cattgggagaaagatggtgcgccgtcccctatgatgcctaatgaagccagattgagaaat
ttaacgtactccgcgccattatacgtagacattacgaaaacaatcgtgaaagatggcgag
gatcctgtcgaaacacaacatcagaaaacatttattggcaaaataccaattatgttgaga
tccaagtactgcttgctcgctggcttatccgatcgtgatttaacagaattaaacgagtgc
ccattggatcctggcggatattttatcattaatggctcggaaaaggttcttatagcgcaa
gagaaaatggcaacaaataccgtttacgtattcagcatgaaagatggtaaatatgcttat
aaagcagaaatcaggtcctgcttggagcacagttcgcgacccacctcaactttatggatt
aacatgatggccaagagcggtgctagcattaaaaagtctgccataggtcaacgtattatt
gccattattccatatattaaacaggagattcccataatggttgtctttcgtgctctcgga
tttgtggccgatcgagatatcctggaacatattatttacgacttcgacgatcccgaaatg
atggaaatggtgaagccgtcgttggacgaagcttttgttatacaggaacagaatgttgcc
ttaaatttcatcggaaccagaggcgccagacccggcgtgacaaaggaaaagcgaatcaaa
tacgcgagagaaattttgcagaaggagatgctgccgcatgtgggcataagtgatttttgt
gaaactaaaaaggcttacttcctcggttatatggtgcacagattactgtcggcgtcccta
ggacgaagggagttggacgatcgcgatcattacggcaacaagagattggatttagccgga
cctctgttggcgtttctgttccgcggtttgttcaagaatcttatgaaggaagtgcgtttg
tacgcacagaagtttatagatcgtggaaaagacttcaatctcgagctggccattaagacg
aaaattatcaccgacggtctgaggtattcactcgccacgggcaactggggcgatcagaaa
aaagcgcatcaggcaagagcgggagtgtcgcaagtactgaacaggctgaccttcgcgtcg
acattgtcgcacttgaggcgagtgaactcgcccatcggaagggacggtaagctcgccaag
ccacgtcaattgcacaacacgttgtgggggatgctttgccccgcggaaacgcccgagggt
gccgctgtaggattggtaaagaatttagctttaatggcgtacataagcgtcggctctcaa
ccttcccccatccttgaattcttggaggagtggtcgatggagaatttagaggaaatagcg
ccgagcgccatcgccgatgctacgaaaatattcgtcaacggatgctgggtgggtattcac
agagatccagatcagttgatggctactctgcgcaaattgagaagacagatggacatcatc
gtctctgaagtatctatgatccgcgatattagggatcgcgaaataagaatatatacagac
gccggtagaattagtagaccactgctcatagtggaaggacagaatctgttattaaagaag
aggcacatcgatatgctgaaagaaagagattataacaacgacgggtggcaggaattggtg
ggcagcggcgtggtggaatacattgacacactggaggaagaaactgttatgatagccatg
tcacctgatgatctcagacaggacaaggagtatgcgtattgcacgacgtatacgcactgc
gaaattcatccggcgatgatcctgggcgtgtgcgcttccattattcctttccccgatcat
aatcaaagtcctagaaatacttatcagagcgctatgggcaaacaagctatgggtgtatat
attacgaatttccacgtacgcatggataccttagctcacgtgttgtattatccgcacaaa
ccgttggtcaccacgagatccatggaatatctaaggttccgtgaattaccggcgggtatt
aacagcatcgtcgcgatcctgtgttacaccggatacaatcaagaagatagcgtcattctg
aatgccagcgctgtcgaaagaggctttttccgatcagtgttctaccgctcgtacaaggag
tccgaatcgaagaagatcggtgatcaggaagaacagttcgagaaaccttcgcgtttgact
tgtcaaggaatgcgcaatgcgatatacgacaagctggatgacgacggaatcatcgctcct
ggaattcgagtgtcgggcgatgatgtgattataggaaaaacgatcactctacctgaaacg
gacgacgagctggacagtacgacgaaacgatttacgaaacgcgacgcgtcgactttcctg
cgaaacagcgagaccggaatagtcgatcaagtaatgctgacgttgaacagcgagggctat
aaattttgcaagattcgcgtgcgcagcgtacgtattccgcagatcggtgacaagtttgcg
tcgcgtcacggtcaaaagggtacgtgcgggattcagtacaggcaggaggatatgccgttc
tcttgcgaaggtctcacacccgatatcatcatcaatcctcacgccatcccttctcgtatg
actatcggtcacttgatcgaatgtatacaggggaaggtttctgccaacaaaggagagatc
ggtgacgccacgccgttcaatgatgctgtcaatgtgcaaaaaatttccacgcttctacaa
gaatacggttaccagttgcgaggaaacgaagtgatgtacaacggacacacaggtcgcaag
atcaacgcccaagtcttcttagggccgacgtattaccaacgattgaagcacatggtggac
gataagattcacagtagagcgagagggcctgtacagatcttagttagacagcctatggag
ggtcgtgcgagagacggcggactacgtttcggagaaatggagcgagattgtcaaatttct
catggcgcggcgcaatttctgagagaacgtcttttcgaggtgtcagatccatatcgaatt
cacatatgcaatttctgcggcttaatcgctatagccaatttacggaacaataccttcgag
tgcaagggttgtaaaaacaaaacacagatttctcaaatcagattgccgtacgcggcaaaa
ttacttttccaggaattgatggcgatgaatatcgcacctagacttatgatacattaa
DBGET
integrated database retrieval system
