Linepithema humile (Argentine ant): 105674583
Help
Entry
105674583 CDS
T04898
Symbol
pcm
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03008
Ribosome biogenesis in eukaryotes
lhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105674583 (pcm)
09123 Folding, sorting and degradation
03018 RNA degradation
105674583 (pcm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105674583 (pcm)
03009 Ribosome biogenesis [BR:
lhu03009
]
105674583 (pcm)
03016 Transfer RNA biogenesis [BR:
lhu03016
]
105674583 (pcm)
03036 Chromosome and associated proteins [BR:
lhu03036
]
105674583 (pcm)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105674583 (pcm)
mRNA degradation factors
5'-3' decay
5' exonucleases
105674583 (pcm)
Ribosome biogenesis [BR:
lhu03009
]
Eukaryotic type
Pre-60S particles
RNases
105674583 (pcm)
Transfer RNA biogenesis [BR:
lhu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105674583 (pcm)
Chromosome and associated proteins [BR:
lhu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105674583 (pcm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
105674583
NCBI-ProteinID:
XP_012226430
LinkDB
All DBs
Position
1:complement(4714406..4724438)
Genome browser
AA seq
1661 aa
AA seq
DB search
MGVPKFFRYISERYPCLSEVIKEHQIPEFDYLYLDMNGIIHTCSHPNDGDVCFRISEETI
FKNIFHYIEVLFNMIHPQKLFFMAIDGVAPRAKINQQRGRRFRSAKEVEVQEAKAKAKGI
SIPQEKRFDSNCITPGTLFMAKLGEQLKRFVEYKISIDNAWKKCKVLFSGSEVPGEGEHK
IMDYIRYMKASEDYDKNSRHCLYGLDADLIMLGLCSHEPNFSLLREEVKFGKQQVKMTPE
ETKFCLLHLSLLREYIEHEFSPIRDKLSFAFDIEKIIDDWVLMGFLVGNDFIPHLPNLHI
ANGALPILYRAYMEVLPTLDGYINEAGTLKLDRFEKFMEKLSRLDLEQFNEHYADLKFFE
SKTGRRPNETERHVYKKSEDSETASPKKIQNKDLEALIKNTTEMTLSNFDEDYDDFLMDM
DLMDMADDESDSDIYNMEFVQHKKYYYMNKLEYDNVDAEVLRSQAEGYVRAIQWNLHYYY
HGCCSWSWYYPHHYAPYISDIKDFKDLKLEFDLGEPFLPFQQLLAVLPAYSKELLPEAFQ
SLLTEESSPIIDYYPHNFKTDLNGKRQEWEAVVLIPFIDERLLLAAMQPHLTKLTTEEQA
RNKHGPMCLYSHADEIRSVHKETVYFPEFTSHAQVTLMIRDDVFVPREKLVRGLSPGFDL
NVYYPGFPILRHLQHTAHLEKAKVKVFQQASLGDNMILTIISEKAPNATTLASKLLGKSV
YVDWPHLKEALVVGVADCDAKFSLINPLGSYAPDNLIKEEMKGVVAGECTLHKKLIKETH
MSRLGIDLGETSVLLFTRSFLGNRYIFGPQGKVTIEKQWNVFTTIHAYQAIVKDISVYTK
KITEYETMHDIFLPGIFCFMLGHPYYGAMGEIISNKDNPKARGITISINPIKEPTFEVVK
QAFAHQKIRYMHGSIAAQRLGISSHLLSRITGTIYVIQASKEEVAKYNIGLNLKFNKKNE
EMPGYTRKDNSQWLYSTKAVELIRNYMVKYPDLFERLAQNVTNDIFQEEELFKPGSNALK
DIVAWLKVELQGIESRACGMDVVEAELVKTIEQEVEKYLKTRDTKGKAVFLQVQPDLLFK
PGLHPLRNVPPDPNSQNRLFDRICCVKIGFTVPIGAKGTIIGVQKATNPQDVMYDVLFDQ
PFMGGLTLNGCSEFRGYRLTAADFINISFGERVEQGNVMNESTDYRKQTTNPASPNKKND
QSKVYPQMQLAKKGLEKLSRDIRLGLAAQRNVKESGPKIILQNKGLPQSPQSAPSNQASE
FQALWDELHKIQKPSGPPQKTVPAFPMTKVKPFNNHNTPPQDPSAILKALLKIPDANAQT
SKQQAKQFAPQSVATPEKATISQKDQKMDPPSLVQQLFDRARQTEEKKEQANPVWYSTQL
LKHFSYNGAGIPKYNYSVDEKTGLIIAHIMLENSTVFKSAPCATREQATESAAKKAYKAL
NLDKVPDAKMMMPPRQQWYNNQQNNWVQNIRPPMGPSIPMGPSKMPPLPSQLSVLNYTFY
PKWQKPPHQIFAPTASYSQNRHQQRQQQGQQRGSQNEPKMGTKHANPFVPLQAQKKSRNA
NVKQTPKETSSSTKKNSSPKVQQQQQRKEETSPKKEKQEVVNKIKEKASSEPQRQQPSQQ
PQRQQPSQQPQQTAGKSSKPRKSRVAAKFGAPSLSNGELPQ
NT seq
4986 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgccgaaattctttagatacataagcgagaggtacccctgtctcagcgaggtc
ataaaggaacatcagataccagaatttgattatttatatttagatatgaatggtatcata
cacacgtgttcgcatccaaatgatggcgatgtttgctttcgcatttctgaggagactatt
tttaagaatatatttcattacatagaagtattgttcaacatgatacacccgcaaaaattg
ttttttatggcgatagatggtgtagcgcctagagcaaagatcaatcaacaaagaggccgg
cgatttagatctgccaaggaagtagaagtgcaagaagctaaagctaaagcaaagggtatc
tcgatacctcaggaaaaaagatttgactcgaattgtataaccccaggaacactttttatg
gctaaacttggcgagcagcttaaacgttttgtcgaatataaaatttccattgataatgct
tggaagaaatgtaaagtactatttagtggatccgaggtccctggagaaggagagcataaa
attatggattatataagatacatgaaagcgagcgaagattatgataaaaattccaggcat
tgtttatatggtctagatgctgatttaataatgttaggtctctgttctcacgagccaaac
ttctcccttttacgagaagaagtaaagtttggtaaacagcaagtaaagatgactcctgaa
gagacaaagttctgtcttcttcatttgtcacttctacgggaatatatagagcatgagttt
tcaccaatcagagataaattgtcttttgcattcgacatagagaaaataattgatgactgg
gttttaatgggttttttagtaggaaatgacttcattccccatttgccaaatctacatatt
gctaatggtgcactgccaattctgtaccgtgcatacatggaggttttaccaacgctagat
ggttatataaatgaagcgggaacattaaaactggaccgttttgaaaagtttatggagaag
cttagtcgtctagatttagagcagtttaatgaacattacgccgatttgaaattttttgag
agtaaaacaggtagaaggcccaatgaaactgaacgacatgtatataaaaaatcagaagac
agcgagaccgcatctccgaaaaaaatacaaaataaggatctagaagctctaattaaaaac
actacggagatgacgttgagtaattttgacgaagattatgatgactttttaatggatatg
gatttaatggatatggcagatgatgagtctgatagtgatatatataacatggaatttgta
caacataaaaaatattattatatgaacaaattagaatacgacaatgttgatgcggaagtt
ttgcgttcgcaagccgagggctatgtgcgagcgatacaatggaatttgcattattattat
catggctgttgcagctggtcatggtattatccgcatcattacgctccgtacatttcagat
ataaaggacttcaaggatttaaagttagaatttgacttgggggaaccatttttacctttt
caacaattattagctgtattaccagcgtacagcaaggagctgttaccagaggcatttcaa
tcgctattgacagaagaatcgtcccctattattgattactatccacataattttaaaacc
gatctaaatggaaagcgacaagaatgggaagcagttgtacttattccattcattgacgag
agactcttgctggctgctatgcagccgcacttgacgaaattaacaacagaggaacaggca
agaaacaaacatgggccgatgtgtctgtactcgcatgctgacgaaattcgaagcgttcac
aaggaaacagtatactttccagaattcaccagtcatgctcaagtaacattaatgatccgc
gacgacgtttttgtgccaagagagaaattagttagagggctgtctccaggctttgatctc
aacgtttattatccgggatttcctatattgcggcatttacagcatacagcgcatttggaa
aaagcgaaggtaaaagtattccagcaagcatctttgggagacaatatgattttaaccata
atatcagagaaggcaccaaatgcgacgaccttagcgtcgaagctgttaggaaagagtgtg
tatgtggattggcctcacttgaaggaggctctcgtggtgggcgtggccgattgtgatgcg
aagttcagtttaattaatccgttaggcagctacgctcctgataatctaatcaaagaggag
atgaagggcgtagtagccggggaatgtactctgcacaaaaaactgatcaaagaaacacat
atgtcacgtcttggaatagatttaggcgagacgagtgtgttgcttttcacgcgctcattc
ctaggcaacaggtatatttttggtcctcaggggaaagtgacgattgagaaacagtggaac
gtattcaccacgattcatgcttatcaggccatagttaaagatatttctgtctacaccaag
aaaataacagaatatgaaactatgcatgacattttcctaccaggaatcttttgtttcatg
ctcggacatccctattacggtgcaatgggagagatcatatcaaataaggacaatccaaag
gcacgcggaatcacaatttctataaatcctataaaggaaccgacgttcgaggtcgttaaa
caagcctttgcgcatcaaaagattcgatatatgcacggcagtatcgccgctcaacgtctt
ggaataagtagtcatctgttaagtagaatcacgggaactatttatgttatacaagcatcg
aaagaagaagtcgctaaatataatattggattgaacctaaaattcaataagaagaacgaa
gagatgcctggttacactagaaaagacaacagtcaatggctgtacagtacgaaagcagtc
gaactgatccgcaactacatggtgaagtatcctgacttgtttgaacgtttggctcaaaat
gtaacgaacgacatttttcaagaagaggaactattcaaaccgggatcgaatgcgctgaag
gatatagtcgcttggctgaaagtagaactacaaggtatagaaagtcgcgcttgcggcatg
gatgtcgtggaagcagaattagtgaagacgatcgagcaagaagtagagaaatatttgaag
actcgggatactaaaggcaaagcggtatttctacaagtgcagccggatctgcttttcaag
ccaggattacatccgttacgtaacgtgccgcccgaccccaattcccaaaaccgtttgttc
gacagaatttgctgtgtcaaaatcggtttcaccgtaccaattggcgcgaaaggcactatt
ataggagtacaaaaagcgaccaatccacaggacgtcatgtatgatgttttattcgatcag
cctttcatgggcggactcacgttaaatggttgctccgagtttcgcggctaccgtttaaca
gccgcggattttataaacatcagctttggcgagagagtggagcaaggaaatgtgatgaac
gaatcgacggattaccggaaacaaacgaccaatcccgcttctcccaataaaaagaacgat
cagtcgaaagtgtacccgcagatgcaactcgctaagaaaggactcgaaaagctcagtcga
gatattcgtttggggttggcagcccagcgcaatgtgaaagaatcgggtcctaagatcatt
ctgcaaaacaaagggctacctcagagtccccaaagcgcgccatctaatcaagcgtccgag
tttcaagcgctgtgggatgaattgcacaagatacagaagccgagcggaccaccgcagaag
acggttccagcgttcccgatgacgaaagtcaagccgtttaacaatcacaacacgccgccg
caagatcctagcgcaattttgaaagctctgttgaaaattcccgatgcaaatgcgcaaacg
agtaagcagcaagctaagcaatttgcgccgcagtctgtggcgacgcctgagaaagcgaca
atttcgcagaaagatcaaaagatggatcctccatctttagtacaacagttgttcgatcgt
gctcgacaaacagaagaaaagaaggaacaagcaaatccagtctggtacagcacacagtta
ttgaaacatttctcttacaacggagctggcataccaaagtacaattatagcgtcgatgag
aaaacgggtttaattatcgcccatattatgctggaaaattctacagtgtttaaaagcgct
ccttgcgccactcgtgagcaagccacagaaagtgcagcaaagaaggcgtataaggcctta
aatttggataaagtgcccgatgcaaaaatgatgatgccacctcgacaacaatggtacaac
aatcaacaaaataactgggtccaaaatatccgacctcccatgggcccttcgataccgatg
ggtccttcaaaaatgccgcctttaccctcgcaactgtccgtgctgaattacacattttat
ccaaaatggcaaaaaccaccacatcaaatattcgcgccaaccgcatcgtacagccaaaac
aggcaccaacaaagacaacagcagggacaacagaggggttcgcagaacgaaccgaagatg
ggaacaaaacacgccaacccattcgttccgttacaggcgcaaaagaagagtagaaacgcc
aatgtaaagcaaactccgaaggaaacgagttctagtactaaaaagaactctagccctaaa
gtgcagcaacaacagcagagaaaggaagaaacctcgcctaagaaggagaaacaggaggtt
gtaaataagatcaaagagaaggcgtcgagtgaaccgcaacgacagcaaccgtcgcaacag
ccgcaacgacagcaaccgtcgcaacagccgcaacaaacagcgggcaaatcgtccaagccc
aggaagtcgcgcgtcgccgcaaaattcggcgcaccatccctgtcgaacggcgaactcccg
cagtaa
DBGET
integrated database retrieval system
