Linepithema humile (Argentine ant): 105675172
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Entry
105675172 CDS
T04898
Symbol
U4-U6-60K
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105675172 (U4-U6-60K)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lhu03041
]
105675172 (U4-U6-60K)
Spliceosome [BR:
lhu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
105675172 (U4-U6-60K)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Gbeta
WDR55
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
PRP4
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_SCAP
Nbas_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
105675172
NCBI-ProteinID:
XP_012227550
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All DBs
Position
5:25027918..25030280
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AA seq
525 aa
AA seq
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MSDDEDLIYVKKQKTVHYGSLEEAERVRLAATVEATDEEKDVTNTNDVTNASISTGNVHI
SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDLEVKKHLRQLGEPICLFGEGPAD
RRTRLRELFASVGEDAIKKKHEEEEKPSHIIEKDTETTWYHEGPESLQIARSWIATYSLP
RAKARLDKARQDLQLPAAARTAKRQELLKKLQALSIYCSQIGDTRPISFCQFSPNSKILA
TASWSGLCKLWSVPDCTLLRTLNGHGCNVGCIVFHPKATITEDVIDDNAEHTCVMASCAS
DGTVKLWSGGTGTEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCYDASWRLWDLEQQAEVL
HQEGHARACHCISFQCDGSVCATGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGIDFSPNG
FHIATASEDNACKIWDLRKRSCIYTIPAHTNLLSDVKYQRIEGQYLITASYDNTAKIWSN
KTWQPLKMLPGHDGKVMSVDVSPDQKFIATTSYDRTFKLWAPEST
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgacgaggatttgatttacgtgaagaaacagaaaaccgttcactatggctct
ttggaggaagcagaacgtgtacggctcgcagctactgttgaagccacagatgaagaaaaa
gatgtcacaaatacgaatgatgttaccaatgcttccatatcaacggggaatgtacacatt
tctaatgagtatatggagctcgaagatgaaatgtctaaagatcgtcaggcgttattggaa
gaatttgaacgtaggaagaaggccagacaaattaatgtttctacagatgacttggaagta
aagaagcacttaagacagttgggtgaaccaatttgtctattcggggaaggtcctgcagat
agaagaacgagattaagagaattgttcgctagtgtcggtgaggatgctattaaaaagaag
cacgaggaagaagagaaaccgtctcatatcattgaaaaggatacagagacaacttggtat
cacgaaggcccagaatcattgcaaattgctagatcatggatagcaacatattcattgcct
agagcaaaggcacggctggataaggcaaggcaagatctacaattaccagccgcagctcgt
acagcgaaaagacaagaacttctgaagaagctgcaagcgttaagcatttattgttcccaa
atcggagatacaaggccaatttccttttgccagttcagccctaattcaaagattcttgct
acggcttcatggtcaggcttatgcaaattatggtctgtacccgactgtactttgttgcgc
actttaaacggacacggttgtaatgttggctgtattgtttttcacccaaaagctacgata
accgaagatgtgatagatgataatgcagagcatacttgtgtgatggcatcttgcgcatca
gatggtaccgtgaaactctggagcggcggcaccggtaccgaaccattagcggaagtagaa
gggcatgaaccgcacagagtctcgaggatagcttttcatccatctggacgattcctcggc
acgtgttgttacgatgcgtcttggcgattgtgggatttagagcagcaagcagaagtgctt
catcaagagggtcacgctagagcctgtcactgcatcagttttcagtgtgacggaagcgtt
tgcgcgacaggcggccacgactctttcggcagagtgtgggacttgcgtaccggtagatgc
ataatgtttatggagggtcatctaaaatccatcttcggcattgatttttcaccgaacggt
tttcatatagccacagcgagcgaggataacgcctgcaaaatatgggacttgcgaaagaga
agctgcatatatacaataccggcgcacaccaatttgctgtccgatgtgaaatatcagagg
atagaagggcaatacttgatcactgcatcttatgataacacagccaaaatttggtccaat
aagacgtggcagcctctcaagatgctaccgggtcacgatggaaaggtcatgtctgtcgac
gtgtctcctgatcagaagtttattgcaacgacttcatatgacagaacttttaaattgtgg
gcgccagagagcacttga
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