Linepithema humile (Argentine ant): 105675802
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Entry
105675802 CDS
T04898
Symbol
Caf1-55
Name
(RefSeq) chromatin assembly factor 1 p55 subunit isoform X2
KO
K10752
histone-binding protein RBBP4
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03082
ATP-dependent chromatin remodeling
lhu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105675802 (Caf1-55)
03083 Polycomb repressive complex
105675802 (Caf1-55)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lhu03036
]
105675802 (Caf1-55)
Chromosome and associated proteins [BR:
lhu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
105675802 (Caf1-55)
Histone modification proteins
HAT complexes
HATB complex
105675802 (Caf1-55)
HDAC complexes
Sin3A-HDAC complex
105675802 (Caf1-55)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
105675802 (Caf1-55)
PRC2.2
105675802 (Caf1-55)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
105675802 (Caf1-55)
Heterochromatin formation proteins
Other heterochromatin formation proteins
105675802 (Caf1-55)
Chromatin remodeling factors
NuRD complex
105675802 (Caf1-55)
NuRF complex
105675802 (Caf1-55)
NuRF complex (fruit fly)
105675802 (Caf1-55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_WDR19_1st
ANAPC4_WD40
eIF2A
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
MIOS_WD40
Beta-prop_IFT122_1st
PEP5_VPS11_N
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
105675802
NCBI-ProteinID:
XP_012228647
LinkDB
All DBs
Position
7:9038902..9042895
Genome browser
AA seq
428 aa
AA seq
DB search
MMADKDGEGFDDAVEERIINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEG
KDYSVHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIE
IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK
EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDVAWHLL
HESLFGSVADDQKLMIWDTRCNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTV
ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSSED
AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPETPG
SEIETGGS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagacaaggacggcgagggttttgatgatgcagtggaggaacgtattatcaat
gaagagtacaagatatggaaaaagaacacaccatttctttacgaccttgtaatgacacat
gctttggagtggccttctctgacagctcaatggcttccagatgttactcgacccgaaggg
aaggattattcagtccatcggctgattctgggcactcatacttcggatgaacaaaatcat
ttgcttattgctagcgtacaattaccaaatgaagatgcgcaatttgatgcttctcattat
gataatgaaaagggagaatttggtggatttggttctgtaagtggcaaaatcgaaattgag
atcaagatcaatcacgagggcgaagtcaacagggctcgatacatgccacagaacccatgt
gtaattgcaacgaaaactccctcaagtgatgtgctagtatttgactacacgaaacatcct
agtaaaccggatcccaatggcgaatgtcatccagatttgagattgcgaggacatcaaaag
gaaggttatggcctttcatggaatccaaatcttaacggatacttattgagcgcatccgac
gatcacacaatttgcttgtgggatatcaacgcgacaccgaaggagaatcgtgttatcgac
gcgaaaaccatcttcacgggtcacacagctgtggtcgaggatgtcgcttggcatctattg
cacgaatcgttatttggttctgttgctgatgatcaaaaactgatgatttgggatactagg
tgcaacaataccagcaaaccgagtcacaccgttgacgctcacactgccgaagtaaattgc
ttgagcttcaatccgtattctgaattcatactggcaactggtagtgcggataagactgta
gcactgtgggacttgcgaaatctcaaattgaaattacattcattcgaatcgcataaggat
gaaattttccaagttcaatggtcacctcataatgagacgatactagctagcagtggaaca
gatagacgactacatgtttgggatcttagcaaaatcggcgaggaacaatcgagcgaagat
gcagaggatgggccacctgaacttctgttcatacacggaggccatactgcgaagattagt
gacttctcgtggaatccgaatgaaccgtgggtcatttgttcagtgtctgaggacaatata
atgcaagtttggcaaatggcagagaatatttacaacgatgaggaacccgagacacctggg
agcgaaatcgagaccggtggttcataa
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integrated database retrieval system
