Linepithema humile (Argentine ant): 105675845
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Entry
105675845 CDS
T04898
Symbol
PAN3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105675845 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105675845 (PAN3)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105675845 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
105675845 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
Motif
Other DBs
NCBI-GeneID:
105675845
NCBI-ProteinID:
XP_012228723
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Position
6:293489..298087
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AA seq
610 aa
AA seq
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MDPSMFVGYTPQTNGVPGVPSESKLATYMNRQSSSIGLNTNSVMKHLSNLSLDQKKITAS
PEFVPGRGLTSSNSSSPNLFSNSYAHSQENVGGTTYFYFGNATSDAVGAEDGAEAIGHVA
AGQIGYVYPGTPSHLHPVKPAKPPSSNNSSAPSTPPLQTVPSFFVNENLRLDILQKNALT
LTQPDVVRFPDLPNEVDNYHELCPLEPIHKPASTALGYQTSTYKATSIKTGTRYCLRRVH
DFRLANTKCMVLVDMWKRLSHTNLVQLREVFTTKAFGDHSMVFVYDYHPASETLLNKHFA
STELNGYTDPFSSDPNAPRPYSHTKNTILRQQHSSMLPESIIWGYIIQLTAAFRVIHAAG
LAYRCLDPTKVLLTSQTRIRLSCVAIPDVVTLDGNAANPLTLIPHYQQEDLVALGKLVLA
LACRSLIAVHRDNMPASLDLITRSYSTDLRNLILYLLSDQPRKSVTDLMPMIGARFYTQL
DNAQLRLDVLENELAKELENGRLFKLLVKLATINERPELNMEPTWAETGDRYMLKLFRDY
VFHQVTADGRPWLDLAHVVACLNKLDSGSQDKICLMSRDEQSVLVVSYAELRQCLETSFG
ELVQSTKDAV
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggatccatcgatgtttgttggatacactcctcaaacaaacggagttccaggagttcca
tcggagtccaagcttgcaacctatatgaatcgccaaagttctagcataggattgaatacg
aattcagtgatgaaacatttgtccaatctttctttggatcaaaagaagataactgccagc
cccgaattcgtgcctggaagaggccttacgagcagcaacagcagctcgccaaatctcttt
agcaattcctatgcgcattcacaggagaacgtaggtggcacaacgtacttttatttcggg
aatgctaccagcgatgcagtcggagctgaagatggtgccgaggctatcggacacgtggcg
gcggggcagatcggctatgtctatccaggcacaccttctcacctgcatcccgtaaaaccg
gcgaagccaccgtcgtctaataactcctccgccccttctacacctcctcttcaaactgtc
cccagctttttcgttaacgaaaacttgcggctggatatcctgcagaaaaacgcattgaca
ctgacacagcctgatgtagtacgatttcccgacttaccgaacgaagttgacaattatcac
gagttgtgtcctttagagccgatccacaaacccgcctcgacagctctcggatatcaaact
tccacgtacaaggccaccagtatcaagacaggcacgcgatactgtttacgccgtgtgcac
gactttcgacttgccaatacaaagtgtatggtattagttgacatgtggaagcggctgtcg
cacacaaatctggttcagctgagagaagtcttcaccaccaaggctttcggcgatcattcc
atggttttcgtgtatgattatcaccctgcctcggaaacgttgctgaataagcattttgcc
tcgaccgagcttaacggttacaccgatccgttctcatcggatcccaacgcgccacggcct
tacagtcacaccaagaacactattctgaggcagcagcatagcagcatgctgccggaaagt
attatctggggttacatcattcaactcactgccgcatttcgtgttattcatgccgctggc
ctggcatacagatgcttagaccccactaaggtgttacttacatcgcaaacgcgaattcgt
ctgagttgcgttgccattccagacgtagtgactctagacgggaacgcggcaaatccgctc
acccttatcccacattatcagcaggaggatttagtggcactcggcaagttggtcttggca
ttggcatgtcgaagtcttatcgctgtccaccgcgacaatatgccagcctctctcgatctg
attacacgttcctactccactgacctccgaaatcttattctgtacttgctgtcggatcaa
ccccgcaaaagcgtcacggatctcatgccgatgattggtgcgcgattttacacacagctg
gataatgctcagttgcgcttggacgtattggaaaatgaactcgccaaagaactggagaat
ggacgattgttcaaattgctggtgaagctagcaaccatcaacgagaggccagagcttaat
atggaacccacgtgggcagagacaggcgatcgttacatgctcaaattgtttagggactat
gtgtttcatcaagtaacagctgacggaagaccctggctggatctagcgcacgtcgtggct
tgtttaaacaagcttgactcgggctcgcaggacaagatatgcctcatgtctcgagatgag
cagagtgttctcgtggtaagttatgcggagctgcgacaatgtctggaaacgtcatttgga
gaactggtacaatccacaaaggacgctgtttaa
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