Linepithema humile (Argentine ant): 105675927
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Entry
105675927 CDS
T04898
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105675927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lhu03041
]
105675927
03009 Ribosome biogenesis [BR:
lhu03009
]
105675927
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105675927
Spliceosome [BR:
lhu03041
]
Complex A
U2 snRNP components
U2 related factors
105675927
Complex B
105675927
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105675927
Ribosome biogenesis [BR:
lhu03009
]
Eukaryotic type
90S particles
Helicases
105675927
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
ResIII
T2SSE
Flavi_DEAD
ABC_tran
AAA_16
AAA_30
AAA_25
Motif
Other DBs
NCBI-GeneID:
105675927
NCBI-ProteinID:
XP_012228853
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MSKRRIEVVDPYVKRKATDSSTSSNATTTAATATKSQVQFNQYTMLPYTPKYYELYKKRI
TLPVFEYRTDFMRLLSTHQCIVLVGETGSGKTTQIPQWCVEYSRSIGSKGVACTQPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIPGDLLLFLTGQEEIEEACKRIKREMDNLG
PDVGELKCIPLYSTLPPNLQQRIFEPAPPTKANGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMDDVQWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLEMIQAKLDSKQYQEGF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgtagaatcgaagtcgtggacccttacgtcaagcgaaaagccacggacagt
tcaacatccagcaatgcgactaccacagccgctacggcgacaaagagccaagtgcagttt
aatcaatataccatgctgccatacacgccaaaatattatgaactttataagaaaagaatt
actttgcctgtattcgaatatcgtactgactttatgagattgttgtccacgcatcaatgt
attgttcttgttggagaaacaggttctggcaaaactacacagataccacaatggtgtgta
gaatattcaaggagtattggaagtaaaggagttgcttgtacacaaccaagaagagtggct
gctatgagtgtagcacagagagtttcagaggaaatggatgttgccttaggtcaagaagta
ggatatagcatccgttttgaagattgcagttcaccaagaaccgtattgaagtatatgact
gatggtatgttgcttcgtgaaggcatgtctgatccaatgctggatgcgtatcaagtgata
ctgcttgacgaagctcatgaaagaacattagccactgacttgctcatgggtgttttgaag
gaagtgatcaagcagagaccggacctaaaacttgtgattatgagtgctactttggatgct
ggaaagtttcagcagtactttgacaatgcaccacttatgaatgtacctggtagaacacat
ccagtcgagatattttatacaccagaaccggaaagggattatctagaagcagctattaga
actgtcattcaaatccaaatgtgtgaagaaattcccggcgatctcttgttatttttgact
ggtcaagaagaaatcgaggaagcttgcaagagaattaaaagagaaatggacaacttggga
cccgatgttggtgaattaaagtgtataccgctgtactcgacgttaccaccgaatcttcaa
cagagaatattcgagcctgctccacccactaaagctaatggtgctatcggtcgtaaagtc
gtggtctcgactaatatcgcggaaacatcattgactatcgatggggttgtctttgtgata
gatcctggttttgccaagcaaaaagtatacaaccctagaattcgtgtcgaatctctttta
gtatcccctattagtaaagcttcggcacagcaaagggctggtcgagctggcagaactcga
cctggaaagtgcttcagattgtatacggaaaaagcgtataaaaatgagatgcaggataat
acgtatcctgaaattttgcgttccaatcttggaagtgtcgtattgcagttgaagaaactt
ggaatcgatgatctggtacacttcgattttatggatccacctgcgcctgaaactctcatg
agagctttggaacttttgaattatttggcagctctcgatgatgacggaaatttgacggat
cttggcgcagtcatggcagaatttccattggatccccaattggcgaaaatgcttatagca
tcttgcaatcataattgtagcaatgaaatactcagcatcactgctatgctttcagtccca
cagtgttttgtgagaccgaacgaatcaaaaaaggccgcggatgatgcaaaaatgaaattt
gcacatattgatggtgatcacttgacgctacttaatgtgtatcattcctttaaacaacat
atggatgatgttcaatggtgttacgataattatgtaaattatcgatcattgaagagcgga
gacaatgtaagacaacaattgagcaggataatggatagatttgtattaaaacgcacttca
acggacttcaattcaaaggattattacattaacatcaggaaagctcttgttaatggtttc
tttatgcaggtagcgcatttagaaagaacaggccattacctaaccattaaggataatcag
gtagtgcaacttcatccaagcagttgtttggatcacaaaccagagtgggttatttataat
gaatttgtgctcactactaaaaattatattaggacagtcactgatattaaacctgattgg
ctactcatgatagcaccacagtattatgacctacaaaatttcccacagtgtgaagcgaaa
agacaattggaaatgattcaggcgaaactagactcgaagcagtatcaggaaggcttctaa
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integrated database retrieval system
