Linepithema humile (Argentine ant): 105676181
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Entry
105676181 CDS
T04898
Symbol
Sym
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105676181 (Sym)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhu03021
]
105676181 (Sym)
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105676181 (Sym)
Transcription machinery [BR:
lhu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105676181 (Sym)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105676181 (Sym)
U7-dependent histone pre-mRNA processing factors
105676181 (Sym)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
SecD-TM1
Motif
Other DBs
NCBI-GeneID:
105676181
NCBI-ProteinID:
XP_012229321
LinkDB
All DBs
Position
5:22751807..22758270
Genome browser
AA seq
1111 aa
AA seq
DB search
MDPRLHRRSEPEKGPNDLIVEWLNEASMSLTEEIKVANICKVQEILLNKEPHLLEPYLDD
VLQFAIDRNAEVRKTVTGFIEEAGIKYPEVIPRIVQILLRLASDEASAVAKRALRASSRI
LRAALKWISSAPVVTSEMELAWTQLSALKIQIINMIDSDNDGIRTQAVKFLEGVVLIQTY
PDPDCPKKSDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMGS
LALIAKMRPQFMPNVIQALQRLQHDLPPTLSDSQVTSVQKQLKLTLLGLMKHPASIEYAS
TIAKQLAQLGAKEQEIIKAYPKPEDVRRMKKRQQEMASASAAKRVKIEALISDEVEVTPS
PVPVPKLPELIELSENFIAERLSVEIATDLVMDSMAWVPDTMTTIFQREYQPTATTDINI
QRQTIAKLLAAQIKQTKAKKSKKDAKEEDAVMEDLIKNPTISVAEAKRERKREKDREKEK
EAKASLEAHEKSLAKARNRLKALKLVEVTKPLSKETKERMLLMAVNRILLSEKTAVLGGV
AAVRSKILTTLAATFNPYIKEAVLRYITDDMRNRLDLALGWLYEEYALLQGFQRRTTLCT
KPQEAPHQAYNFLLCTLVSAIDLVPGKDRDTLLSRLYLEAPLITEDAVEALKMVSSDETR
GLAPLQLLKEMVVRRPTKQLVFLNVLLCHTGHENNTIREAAIQLVCQLYSRPELSKLIEE
YAVLYLGFLRLHNPPEIVFGQDRGRPQIENLWTESTTRACLGLYLALLSEHQDLIHELAR
VYTSMGADVKRIVLRLVEGPVRSLGMGSPQLLALVENCPKGSETLVTRIIHILTEKSAPS
AELVARVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGTHN
NDSGVPHTSPITPAELLIALHNIDPSKAELKTVIKATSLCFAEKQAYTQETVAVVMQHLM
EMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQPKVWEGFVKCCERTQPQS
FAVILQLPPAQLAEALRMASNLRAPLLAHVEAFAENQKAHIPQSIMDVIQGKVPCDIHDE
FDIAPPGDYTNDQKSDTMDIDLSEPAPPGLE
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggatccacgtttgcatagaagatccgagccggaaaagggaccgaacgatttgattgta
gaatggttaaatgaggcttccatgagtcttactgaggaaattaaagttgcaaacatatgt
aaagtacaagagattttgttgaataaggaaccacacttgttagaaccttatttagatgat
gttctacaatttgcgatcgatagaaatgctgaagtcagaaagacagttacaggatttatt
gaagaagctggaataaaatatccagaggtaattcctcggatagtacaaatacttcttaga
ttagcgtcagatgaagcgtcagctgtagctaaacgagcgcttagagccagcagtagaata
ctaagagctgctctcaaatggatttccagtgctcctgttgttacatcagaaatggaattg
gcgtggacccagctaagtgctcttaaaattcaaattataaatatgattgacagcgataat
gacgggataagaacacaagctgtaaaatttctggagggtgtagtcttaatacaaacatat
ccagatcctgactgtccaaaaaaatctgatgacttttccttggaagatattccattaaca
ttaaaaatagctcgtagacgaaaattagaagaagaagcgaatcatgtcatggatttgctt
attaaatttcatggatcaccgcacgttagcagtgtcaatttaatgacatgtatgggatct
ttagcattaattgccaaaatgagaccacagtttatgccaaatgtaattcaagccttgcag
aggttgcaacatgatctgccacctacgctatctgattctcaagtaactagcgtacagaaa
caattgaaactcacacttcttggactaatgaaacatcctgctagtatagagtatgcttca
accatagctaaacagctggcacaacttggtgcaaaagagcaggaaattattaaagcttac
ccaaaaccggaagatgttcgtcgtatgaaaaaacgtcaacaggagatggcatctgctagt
gctgcaaaacgagtaaaaattgaagctttaatatcggatgaagtcgaagtgacaccgagc
cctgttcctgtgcccaaattgccagaattaattgaactttccgaaaatttcatcgcagag
agactcagtgtagaaatcgcgacagatttagtgatggacagcatggcttgggttccggac
actatgaccacaatttttcaaagagaatatcaaccgacagcaactaccgatattaatata
caacggcaaacaattgctaaacttttagcagcacaaatcaaacagactaaagcgaagaag
agcaagaaagatgccaaggaagaagatgccgtaatggaagacttaattaagaatcccact
attagcgtagctgaggcgaagcgtgagcgtaaacgcgaaaaagatcgtgagaaagagaag
gaagcgaaagcatcgttagaggctcacgaaaaatcgctagcaaaagctagaaatcgtttg
aaagcgttgaaattagttgaagtaacaaaaccactttctaaagaaaccaaggaacgaatg
ttactgatggcagtcaataggatattactttcggaaaagacggcagttcttggtggtgta
gctgctgtaaggtccaaaattctgaccacacttgcagccacttttaatccttatattaag
gaagctgtgctgcgttatattactgatgatatgcgaaatcgattagacttagcgctaggc
tggttatatgaagagtatgcattactgcagggatttcaaagacgaactacgttatgtaca
aaacctcaggaagctccgcatcaagcatataactttttattgtgcactttggtctcagct
attgatttggttccaggaaaagatcgcgataccttgttgtccaggttatatctagaagcg
ccattaataacagaagatgccgtagaggccttaaaaatggtatcttccgacgaaactaga
ggtcttgcaccattgcagcttttgaaggaaatggtagtgcgtagaccgacaaaacaattg
gtgtttttaaatgttttgttatgccatacgggacacgaaaacaatacgatacgagaggct
gcaatacaattagtctgtcagttgtatagcaggccggaattaagcaaactgatcgaggag
tacgcagttttgtatctaggctttttacgccttcataatccacccgaaattgtttttgga
caagatcgaggaagaccgcaaatcgagaatctgtggaccgaatcaactacacgtgcctgc
ctaggattatatcttgctctcctcagtgaacatcaagatctcattcatgaattagcgaga
gtatatacatccatgggagcagatgtgaaacgtattgtattaagactggtagaaggaccg
gtgagatctttgggtatgggtagtccgcaattactggcacttgttgagaattgtccgaaa
ggatctgagactttagtcacgaggatcatacatattcttacagagaaatctgccccaagt
gcagaactggtggctagagtgcgagagttgtatcaaacgagagtctccgatgtcagattc
ttaatacctgttctcaatggactcacaaaaaaagaagtgattgctgcacttccaaaatta
ataaaattaaaccctattgttgtaaaagaggtgttcaacagattacttggaacacataac
aatgacagcggtgtacctcatacgtcgcctattacacctgcagaattgttaatagcttta
cacaatatagatccaagcaaagctgaattaaagactgttatcaaagcaacgtccctttgc
ttcgctgagaagcaagcgtacacgcaagaaacagtcgccgttgtgatgcaacatcttatg
gagatgacacccttgccgacattactgatgcgcacagttatacaaagtttggctctttac
cccagactaagtggatttgtcatgaatatacttcaacgtttaattctaaaacaagtgtgg
aaacagccgaaagtgtgggaaggttttgtcaaatgctgcgaacgcacgcagccgcaaagt
ttcgccgttatattgcaattaccaccggcacagttagcagaagcgctccgaatggccagc
aatttacgcgcccctttattagcccatgttgaagcttttgctgagaatcaaaaggcacac
attccacagtcgataatggatgtcatacagggtaaagtgccctgtgatatacatgatgaa
tttgatattgcaccacctggtgattatacaaatgatcaaaaatcagatacaatggatatt
gatctttcagaaccagctcctcctggtttagaatag
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integrated database retrieval system
