Linepithema humile (Argentine ant): 105676330
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Entry
105676330 CDS
T04898
Symbol
Clp
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105676330 (Clp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhu03021
]
105676330 (Clp)
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105676330 (Clp)
Transcription machinery [BR:
lhu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105676330 (Clp)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105676330 (Clp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
Nab2-like_zf-CCCH_
zf-CCCH_DUS3L
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
105676330
NCBI-ProteinID:
XP_012229536
LinkDB
All DBs
Position
3:complement(6130410..6135183)
Genome browser
AA seq
287 aa
AA seq
DB search
MDCMVASVDSMRFDIEIALDEQYGALPLPFTGMDKSVAAVCQFYPKGSCSKGASCPFRHV
RGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPETK
VRDCPWYDRGFCRHGPLCRHRHVRRVLCMAYLAGFCPEGPNCKFMHPRFELPAVQDMQPK
EGKKVMITCHFCGEGGHKAIYCNKMPPDVREAQVRQELDNNSHTSHHHMNMHNGPPQPRG
PQKPLEEVTCYKCGQKGHYANKCPKGHLAFLSHAGSGGSGQNQNYRR
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggattgtatggtagcaagtgtggatagcatgcgatttgatattgagattgctcttgat
gaacaatatggagctcttcctttaccttttactggcatggataaatcagttgctgcagtg
tgtcaattttatccaaaaggttcttgcagtaaaggagcttcctgtccatttagacatgtt
cgtggcgatcgcacaatagtatgtaaacattggttaagaggtctttgcaaaaaaggagat
cagtgtgaattcttacatgaatatgacatgacaaaaatgccagaatgttatttttactct
agattcaatgcatgtcataataaggaatgtccattcttacacattgatcctgaaactaaa
gtcagagattgtccgtggtatgatcgtggtttctgtagacatggtcctttatgtcggcat
cggcatgtcagacgtgtactgtgtatggcttacttagctggtttttgtccagagggacca
aattgcaaatttatgcatccgagatttgaattgccagcggtgcaagacatgcaaccaaaa
gaaggtaaaaaggttatgatcacttgccacttctgtggggaaggtggccataaagcgatt
tattgcaacaaaatgccacccgacgtgcgggaagctcaagtacgacaagagcttgacaat
aattctcacacatcacatcatcatatgaatatgcacaatgggccaccgcaaccgcgagga
ccgcaaaagccactcgaagaagtgacgtgttacaaatgcggccagaaaggacattacgcc
aataaatgcccaaagggtcatttagcgtttttaagtcatgcgggtagtggaggtagtgga
cagaatcagaattatcggagataa
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