Linepithema humile (Argentine ant): 105677059
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Entry
105677059 CDS
T04898
Symbol
Smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105677059 (Smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105677059 (Smg5)
03032 DNA replication proteins [BR:
lhu03032
]
105677059 (Smg5)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
105677059 (Smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
105677059 (Smg5)
DNA replication proteins [BR:
lhu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
105677059 (Smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
105677059
NCBI-ProteinID:
XP_012230829
LinkDB
All DBs
Position
6:complement(5178413..5183491)
Genome browser
AA seq
1023 aa
AA seq
DB search
MRKSCNATVEARTTECLEVTRRLHKSVTEIVKKLDEQKNRALTVSDIFVPSVKVLRMRLK
DYCQRLILKDPVGNGYKIEELLWRKAFYDVVYAAKKLRKANIWNDEEKALLAVHLEVGVG
YYHHLILKLQFEYDLDLVGVVDFAFIHSENILSYVRAKTGQSKTYAKEVKQSVIRLIHRS
LVCLGDLSRYKLELDSNWDPMIANRYYKMAIAIDPNIGMPHNQLGSIAGNKNYGLDGVYH
YMRSVLCSEPFEGAEGNLKRSVVNHSICTDENNSVHHCISRLFSLLRLWDYENPNSDRIN
QECQDLLTDLENCLTMKQIESHNANSLENVDSIETYLQNCKNKPMLYLTDDMVFKITTIC
LMSISRLKSKESSEVQGVVAITLAILSQLLQITITRLQEMVTDIAVSAVEATAKTETYSA
KLKNGQERRTSCEQKNNGDCLENENSAVNKDNNVLNLNKNDKAKSLDNGVVNESSVKKAR
DKSKSLLSKLRRRKRRTSSDSDASDLDQSTLASSSDEINSDVSETEGDGAISDDALSDDN
TDDEESLLGNKVQTKNTTKEEINGHVSDVAGKTKNCENNNVNHVNGEQHTIDQTDLKGVD
NKDSVTNSSSTVTITTNTDSISTFEESNGDLCAANGVVPHVTQLKKQNLKPDDILSLLVD
KEILTSVKVCCDWLRSNPDIMRICAKSSRTLLKRITILLNLIDIDAEAFVRKTGDSTILS
SAERLKECVKTVPLPEDIDLRGLNLLEDAHKSLDWHILHKHKMNKWEETLLRVLKLIEFG
HHLSSVENSGVRYDQTEQLFLVTNSSPSNAPKATGLDEKNFGPDHSKRKLMRHMGKLWLK
AEVRALENQLCCRFISPYLVPDHEALAKHMPALKRLVSAKKFIVVIPAVVVSALDEVKRV
SAQAREATRWLESQFRGGSRFLRAQRPNERLALPLIKGPRPKDKEARLFFQIIECCNFLT
QQAKVGFTGDGDAPVVTLLTGSDPNDRKALTFSPDGLAKSAGVNLEHIESFQMKWKSSIK
SHG
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagtcttgtaacgccacggtggaggcccgaacaacggaatgcctcgaagtcacg
agacgtctgcataagagtgtgacagagattgtcaagaaattggatgaacagaaaaatcga
gctttaacagtaagcgatatatttgttccatctgtgaaagttctacgcatgcggcttaag
gattattgccagagattgatattgaaagaccccgttggaaatgggtacaaaatagaggaa
ttgctttggagaaaggcattctatgatgtcgtatatgcagccaaaaagttgcgaaaggct
aacatctggaatgatgaagaaaaggctttgttggcagttcatttggaagtgggtgtggga
tattatcatcatctgatattgaaactacagtttgagtatgatctagaccttgtcggtgtt
gttgatttcgcatttattcatagcgagaatattttatcatatgtgagagctaagacgggg
caatctaaaacttatgccaaagaagtcaaacaatctgttatacgtttgatccatcgaagc
ttggtatgccttggagacctgagcaggtacaaattagaattagattcaaattgggatcca
atgatagcaaacagatattataagatggctatagccattgacccgaatattggcatgcct
cacaaccaacttggttctatagcgggcaacaaaaattatggattagatggagtctatcat
tacatgagaagtgttttatgttctgagccatttgaaggagcagagggaaatttgaagaga
agtgtggtaaatcactccatttgtacagacgagaacaattctgttcatcattgtatatca
cgattattctctttattacgtttatgggattacgaaaatccaaattccgacagaataaat
caggaatgtcaggatcttttaactgacttagagaattgcttgacaatgaaacaaattgaa
tcacataacgcaaattctcttgaaaatgtggatagtatagaaacatatcttcaaaattgc
aaaaacaaaccaatgctttatctaacagatgacatggtgtttaaaattacgacaatatgc
ttaatgtcaatttctagattaaagagcaaagaatccagtgaagtacagggtgttgttgct
ataactttagcaatattatcgcaattactgcagattacaataacaagattacaggaaatg
gtcacagatatagcagtgtctgctgtagaagcaactgcgaaaacagagacttattccgca
aaattgaaaaatggacaggaacgtcgaacgtcatgtgaacaaaaaaacaacggagattgt
ttagagaatgaaaactccgctgtgaacaaagacaataatgtactcaatttgaacaaaaac
gacaaagcaaaatcgctggataacggagtagtgaatgaatccagtgtcaaaaaagctcgc
gacaaatcgaagagtcttctcagcaaactccgtagacgaaagagaaggaccagttctgat
tcggacgcgagcgatttagatcagtcgacattggcatcgtccagtgacgagattaactcg
gacgtgtccgagacggaaggggacggtgcgatatcagacgacgctttatcggacgacaat
acggacgatgaagaatcattgcttgggaacaaagtccaaacaaaaaacacaacaaaggaa
gagataaacggccatgtcagcgacgttgccggtaaaacaaagaattgcgagaataacaat
gtcaatcacgtcaatggcgagcagcacacgattgatcagacggatttgaagggtgttgat
aataaggattctgtaacgaattccagcagcactgtcacgatcacgaccaacacagactcg
atcagcactttcgaagaaagcaatggtgatttatgcgccgcaaacggtgtcgttcctcac
gtgacacaattgaagaagcagaacttaaagccggacgatattttgagcttgttggtcgac
aaggagatcctcacgtccgtcaaggtgtgctgcgactggctgcggagtaatcccgatatt
atgagaatatgcgccaagagttcgcgaacgttgctgaagcgtattacgattctattgaat
ttgatcgacatagacgcggaggcattcgtacggaaaaccggcgattccacgatcttgtcg
agcgccgagaggctgaaggagtgcgtgaaaacagtgcctctaccagaggacattgacctc
agggggctgaatttgctggaggatgctcacaagtctctcgattggcacatactgcacaaa
cacaaaatgaacaaatgggaggagacgctactgagagtgttgaagctgatcgagttcgga
catcatctcagttccgtcgagaattccggcgtgcggtacgatcagactgaacagttgttc
ctggtaacgaattcgagtccgtcaaacgctccgaaggcgacgggtctggatgagaagaac
tttggaccggatcactcgaaaagaaagcttatgagacacatgggcaaactgtggttgaaa
gctgaggttcgagctctggagaatcagttatgttgtcgctttatatcgccgtaccttgta
cctgatcatgaagctttagccaagcacatgccggcccttaaacgcttagtgtccgcgaag
aagtttatagtagtgattcccgcggttgttgtctctgccttggatgaggtgaaacgtgta
agtgcgcaggcgagagaagcgacgcgatggctggaatcacaatttagaggcggttcaaga
ttcttacgggcgcagagacctaacgaacgtttagcgctcccgttaataaaaggaccaaga
cccaaggacaaggaggcgcggttgttttttcagataatagagtgttgtaatttccttact
cagcaagcgaaggtcggttttaccggtgatggagacgcaccagtcgtgacgcttttaact
ggcagcgatccgaacgacaggaaagctctgacttttagtcccgatggattagcgaaaagt
gcaggtgttaatctcgagcatatagaatcatttcaaatgaagtggaaatcgtctattaaa
agccacggttga
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