Linepithema humile (Argentine ant): 105677168
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Entry
105677168 CDS
T04898
Symbol
sima
Name
(RefSeq) uncharacterized protein sima isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu04137
Mitophagy - animal
lhu04140
Autophagy - animal
lhu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105677168 (sima)
04137 Mitophagy - animal
105677168 (sima)
04148 Efferocytosis
105677168 (sima)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lhu03000
]
105677168 (sima)
Transcription factors [BR:
lhu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
105677168 (sima)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS
PAS_3
PAS_11
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
105677168
NCBI-ProteinID:
XP_012231009
LinkDB
All DBs
Position
1:10740653..10820311
Genome browser
AA seq
1535 aa
AA seq
DB search
MNVRLQEMTVGRGEAGKEEGDIILDDSRQQQRGRCSDSRDDWIGKASGYAYFDERYMTRR
NQIESPKLPSAPPYGPALVLGNTEDILPGNVAAPSSTVTSHIGDNARSRACDIETTSCTT
TRFPYAVNCNVACSSIVPATCNNASASDDSGTTLYRDSGPQLETCAAISKSCQLGFVDVE
DLAMYFDKPPATSNRAIHSRRSRYGQAARMDQPRQDRRDRLTGSECDLNTYHLRSSDLGS
HNLRPCDLGSNNPWPSEPAAGDPRTCNLGSGNQQYRDVRFGDLQSYHLGTNISEFDDPRS
SNVAFNNLGETRNSEYNDPRSYDVFEAYQLRFDDSQSCDLRLCEVQPRELGRDKLGRCNL
GPDNWYCNNCPELFNFCSEKRWLQCPASDRCPLYDPSYAYGAPILPPCMYENLHADYNDN
DNWHYGYAEDDQLLEDYLSNEKRKERSRDAARCRRSRETDIFAELAAALPVAPEQAAHLD
KASVMRLAIAYLKVRAVIDSIPASLAKSESSAEMDELFPKALNGFMLVLSSDGNMVYLSE
NVNDYLGISQMDMMGQSVYEYSHPCDHDELRECLSSKPTDNNEKRACSFFLRLKCTLTSK
GRKVNLKSASYKVIHCTGRLTNIGDSNSNSVEADDEKREKEDEPVEQNTGASLVLVGSPI
PHPSNIEIPLGRHTFLSKHSLSMKFTYADEKLAEYLGWNSEELMGRSVFEFYHALDNLAL
DKCFKCLFSKGQCETVAYRFLGKRGGYAWVVTQATLIHCSKQQKPISVVCVNYILSGVEH
EDEVYSVRQQAARDSGTELKPERALPTLVPTSDSRSKKGPIVLDDEEISVKESITVDDES
KSDDRPLAVTASIFRSANGKNDCKNNLRKDSDLSRPVQEKAFVQALKESLEESIKESLKE
NNEPVVAERQERPAFVRTPFIFQGKPAVVRTSSDSAGHRDCPQAVTKHLFTPLTPVVQQQ
QQQQQQQEQAQISCRPPPQTATASIFAPRTEDMNKGFLTFSEDQPGLTMLKDEPEDLTHL
APTPGDVCVPLEDTPLLSDMLDEFIFGHDTYSSLLSSGDTLSPELRSADLSDPLKDADLV
DTTARTKDAADRLADSDPFMYGDSPGSPCGIDPSSVSPSLSKYRQSSERSVDSLGSPTGG
SGGDGLSEDEMLMLGISDGIGDDELALRAPYIPMSDQDEALELLISDDMVMWSPSQSVDK
GSSKWLFDDREQRGSESSLAQLLRTDQAVSRRYNDHGGGLMNPAHIFEQTSRKSAVLEID
RWSSSQERTDRPSKRNHSGLNTDFGSEHKRLKCEDSSFKHISLEDTLLMRQQRSSHKKSL
SLDNTCGSQLLRRLVSPQASTVVSQTMSSSDGERRRNTLEQRARVLDDIIDFAESEGDRG
GGKGGGGNRGGDGPNKIDGTSRSRNPSCIAGGSSVLMNLLVSGCDDPLMNSRNVPTLLSR
NLTSPLSVNVDNQLVPQHANANNVISLPDHLSPDTRKHLIGPFTGDAGGGGTTPIISPTT
SAIAAFGGFGYDESTAGLLQVGPDLLGGLLDRNLV
NT seq
4608 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtacgtttgcaggaaatgactgtcggaagaggtgaggcgggaaaagaggaaggg
gacatcatcctcgacgatagtcgtcagcagcagcggggtcgttgctccgattcgcgcgac
gactggatcggcaaggcatcgggttacgcgtatttcgacgagcgttacatgacgagacga
aaccagatcgaatctccgaaactaccgtcggcgccgccttatggtccagcactcgtgctc
ggcaacacggaagacatcttgcccggcaatgtcgccgcaccctcttccaccgttacgtca
cacattggcgataatgctagatcacgagcttgcgatatcgagacgacatcttgcacgacg
acgagattcccgtatgccgtaaattgcaacgtggcgtgcagtagtattgtgccagcaacg
tgcaataacgcatcagcgagcgacgattcggggacgacgttgtaccgcgacagcggtccg
cagttggagacttgcgcggcgatctcgaaaagctgccagctggggttcgtcgacgttgag
gatctcgccatgtacttcgacaagccgcccgcgacgagcaatcgtgcgatccactcgaga
agatcgaggtacgggcaggccgcgaggatggatcagccgcgacaggatcgtcgtgatcgt
ctcacaggatccgaatgcgatctaaacacttaccatttacggtcttccgatctaggctcc
cataatctacgtccttgcgatctgggatctaataatccgtggccctccgaaccagcggct
ggcgatccacgcacttgcaatttagggtctggaaatcagcaatatcgcgacgtaagattc
ggcgatctgcaatcttatcatttaggaacgaacatctccgaattcgacgatccacgatcc
agcaatgtggcatttaataatttaggagaaactcgcaattcagaatacaacgatcctcgc
tcttacgatgtatttgaggcgtaccagttgagattcgacgattcgcaatcctgcgatttg
aggctgtgcgaggtgcagccgcgcgaactggggcgagacaaactgggacgatgcaatctg
gggccggacaattggtactgcaacaactgtccggaactgtttaatttctgcagcgagaaa
cgatggctgcagtgcccggcgagcgatcgctgccctctttacgacccctcgtacgcttac
ggtgccccgatcttgccgccgtgcatgtacgagaacttgcacgccgactacaacgataac
gataactggcattacggctacgcagaggatgaccagctcctcgaggattatttgagtaat
gagaagaggaaagagagatctcgcgatgcagcgcgttgtaggcgtagcagggagacggac
attttcgccgaacttgcggccgcgcttccggttgcaccggaacaggcagcgcacttagat
aaggccagtgtaatgaggttggcgattgcctaccttaaagttcgagccgtcatagactcc
attccagcatcgctagcaaagtctgagtcgtccgcagagatggatgaactatttccgaaa
gctctcaacggctttatgttagttctctccagtgatggcaatatggtttacctctcggag
aacgtcaacgattatctcggaatatcacaaatggacatgatggggcaaagtgtatacgaa
tacagccacccctgcgaccatgacgaattgcgcgagtgtttatcctcaaagccgacagac
aataatgagaaacgtgcttgcagtttctttttacgactcaaatgtactctcaccagtaag
ggtagaaaggtcaatttgaagagcgcctcctacaaggtaatccattgcaccggcagattg
acgaatattggcgactcgaattcgaattccgtggaagccgatgacgagaaacgagaaaaa
gaggatgaaccggtggagcaaaatacaggcgcttccctggtgctcgtgggtagtccaata
cctcaccccagtaatatcgaaataccattgggacgtcatacctttttatcgaagcacagt
ctcagcatgaaattcacgtacgctgacgaaaaattagccgaatacttgggctggaacagc
gaagagctgatgggtcgatcggtctttgaattctatcatgcactcgacaatctggcgctg
gataaatgcttcaagtgcttgttcagcaagggccagtgcgagaccgtggcgtacagattt
ctcggcaaacggggtggttacgcctgggttgtcactcaagccactctcatccactgctcc
aagcaacagaaaccgatctccgtcgtctgcgtaaactacattctaagtggggttgagcat
gaggatgaggtgtacagcgtgcgccagcaggccgcacgtgacagcggcacggaattgaag
ccggagagagccttgccgacgctggtgccgacgagcgatagtagatcgaagaaaggcccg
atagtgctggacgacgaagagatttccgtgaaagaatcaatcactgtcgacgacgagtca
aaaagcgacgatcggccgctcgccgtcaccgcatcgattttccgttcggcgaacgggaaa
aacgactgtaagaacaacttgcgaaaagacagcgacttatcgagaccggtacaggagaag
gcattcgttcaggcgctcaaagagtccctcgaagaatcgattaaggagtctctgaaggaa
aacaacgagccggtggtggcagagcgacaggagcgaccggcgtttgtgaggacacccttt
atattccagggtaaaccggcggtggtacgcacttcttcagacagtgccgggcatcgagat
tgtccgcaggcggtcacgaaacatttgttcacgccacttacacccgttgtacaacagcag
cagcaacaacaacaacaacaggaacaagcgcaaatctcctgtcgaccgccgccgcagacg
gccacagcgagtatctttgcgcctcgcaccgaggacatgaacaaaggcttcttaacgttc
agcgaagatcagccgggtctcaccatgttgaaggacgagccagaggacttgacgcacctt
gcgcccacacccggtgacgtgtgcgtgcccttggaggacactccgcttttatcagacatg
ctagacgagtttatcttcggacacgatacctacagctcgctgctgagctcgggtgacact
ttatcaccagaactgcgttccgcagatctttcagatcccttaaaggacgcggatctggtg
gacactactgccagaacgaaggatgcggctgaccgtctcgccgacagtgatcccttcatg
tacggcgattcgcccggaagtccctgcggcatcgacccgagctccgtgtcgccgtccctc
tcgaagtaccggcagagttctgaacgcagcgtggactcgctgggtagccctacaggaggc
agcggcggcgacggcctttccgaggacgagatgcttatgttaggcatcagcgatggtata
ggagacgatgaattggctctcagggcaccctatattccgatgtcggaccaagacgaagcg
ctagagctgctcatcagcgatgacatggtcatgtggagcccgtcgcaatccgtcgacaaa
ggatcctcaaagtggctatttgacgacagagagcagcgtggatcagaatctagtctggcg
caactgctgcggaccgatcaagcggtatcgcggcgatacaacgaccacggtggaggtttg
atgaatcccgcgcacatcttcgaacagacatctagaaaaagcgcagtcttggaaatcgat
cgatggtcctctagccaagaacgtaccgatcgccccagtaagcgcaaccattctggactc
aatacagatttcgggagcgagcacaaacgcctcaagtgcgaggactcgtctttcaaacac
ataagcctcgaggacactttgctgatgaggcaacaacgatcgtctcacaagaagtcgcta
agtttggacaacacctgcggcagccagctcctacgtcgcctcgtctcgccgcaggcgtcg
accgtagtgtcgcaaaccatgtcctcgtccgacggcgaacgccgtcgcaacaccttggag
caacgcgctcgcgttctcgacgacatcatcgacttcgccgagtcggagggcgaccgcggc
ggaggaaaaggtggaggcggaaatcgcggtggcgatggtccgaataagatcgatggaacg
agccggagcagaaatccgtcctgcatcgccggcggcagcagcgtgctaatgaaccttctg
gtttccggctgcgatgatcccctgatgaattctcgcaacgtgccgactttgttatcgagg
aacttgacgtcaccattgtccgtcaacgtggataatcaactggtaccacagcacgcgaac
gcaaataatgtcatatccttgcccgaccacctcagtccagataccaggaagcacttaatc
ggacccttcaccggagatgctggcggcggaggaacgactcctataatttcgcctacgacg
tcagcaatagcggctttcggcggttttggttacgacgagtccactgcgggtctattgcaa
gtggggccagatcttcttggaggcctactggaccgaaacttggtgtga
DBGET
integrated database retrieval system
