Linepithema humile (Argentine ant): 105677512
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Entry
105677512 CDS
T04898
Symbol
Upf3
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03013
Nucleocytoplasmic transport
lhu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105677512 (Upf3)
03015 mRNA surveillance pathway
105677512 (Upf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105677512 (Upf3)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105677512 (Upf3)
mRNA cycle factors
P-body specific factors
105677512 (Upf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
105677512
NCBI-ProteinID:
XP_012231607
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Position
2:complement(727121..731445)
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AA seq
701 aa
AA seq
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MIEETQQSENSVQNDSCSVQNDVQINSLDVGKTKDNKKEKCRPMTKVVIRRLPPSMTQDQ
FLEQVSPLPDHDYLYFVKADMSLGQFAYSRAYINFVEQQDIFMFREKFDNYVFVDSKGME
YPAVVEFAPFQRLPKKRAGKKKDLKCGTIESDSYYISFLESLKNQEIDPSVAQSKTEYSY
QPPDNTVKKIMTTPLLEYLKIRKQEKQRLKDEKREERRRRDIERRRTKDDPIVSKHVNSV
EGNLSSNFVISRPANVKFEDTFFQCFVENASARKCRKEILFNRFICERAQEKICKTHQRF
YEHIKKAKPIRNMFDVKKQYLNGGKQVSCKTYLCFHKGDHVLRNPDLDKESRDDKENKDE
RDKMPLKELKNRNKRDDKIREKLSRDRETKPIIKGYRERVDDRNKDRDIKQRRYDEKKPY
GRRDERDSMREERRNDFKDDRRYEAKEEFRESRDRKMEERRGKSYEKMRQEKKKLAETKK
QIADVNGDDTSPKKVKEEQDTAQEREDGGKESVHNDDDSKHAKDNECTQRNTAEDRVTAT
QDCGDNAEEGIISLSAGANEDDECEEKSKVVKRRSSLESSGEGGAGDGSCLRRHKSLDGG
GPSNLQKNEIEEKEKDKKDPRMERRIRNKDRPAMEIYRPGMGKFSKQRLEREKSNNDERA
SLSQSPTPNAGTSSAPGKPGKPGATEVRSMTFKRSVSRDVA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaggaaactcaacaatctgagaattctgtacaaaacgacagctgttctgtgcaa
aacgatgtacagatcaattcattggatgttggaaaaaccaaagataacaaaaaggaaaaa
tgtcgtcccatgacaaaggtggtgatcagaagactccctccttcgatgactcaagatcaa
tttttagaacaagtctcccccctgccggatcacgattatttgtactttgtgaaggccgac
atgtctctcggccaatttgcatattcgcgcgcttacattaatttcgtggagcaacaagat
atcttcatgtttcgggagaagtttgacaattatgtcttcgtagattccaaagggatggaa
taccccgccgtggtggagtttgcgcccttccaaagattaccaaagaaacgagcaggcaaa
aagaaggatctcaaatgcggcactatcgagagtgattcctattacataagtttcttagag
agcttaaaaaatcaggagattgatcctagtgtagctcaatcgaaaaccgaatactcctac
cagccaccagacaatacagtgaagaaaatcatgacaactccgctgcttgaatatttgaaa
attcgcaagcaggagaaacaacgtcttaaggatgagaagcgcgaggaacggcggaggaga
gacatagaaagacgaagaacgaaagacgatcccatcgtttctaagcacgtaaatagcgtt
gaaggtaatctatcgtccaactttgtcatatctcgcccggcaaatgtcaaattcgaagat
acgttctttcaatgctttgtcgaaaacgctagtgcacgtaaatgcagaaaggagattctc
ttcaatagatttatatgtgagcgagcgcaagagaaaatatgtaaaactcatcagaggttt
tacgagcacatcaaaaaggcaaaaccgattagaaatatgttcgatgtcaagaaacaatat
ttaaatggcggcaaacaagtcagctgcaaaacttatctctgtttccacaaaggcgatcat
gttctaaggaatccggatctggataaggagtcgagagatgacaaagaaaacaaagacgag
agagacaagatgccattaaaggagctgaagaatagaaacaaaagagacgacaaaatcaga
gagaaactgtcgcgcgatcgagaaactaaacccatcattaaaggatacagagagcgagtt
gacgacagaaataaagatagagatatcaagcagcgacggtacgacgaaaagaagccttac
ggaaggcgcgacgaaagagacagcatgagagaggagagaaggaatgattttaaggacgac
aggagatacgaggcgaaggaagagttcagggaatcgcgagacagaaagatggaagagaga
cgcgggaaaagttatgaaaaaatgaggcaggagaagaagaaactggcggaaacgaagaaa
cagatcgctgacgtgaacggggacgatacgagtccgaagaaggtgaaggaggagcaggat
accgcgcaggagagggaagacggcggcaaggaatctgtacataacgatgacgactcgaaa
cacgccaaagacaacgaatgcacgcaacgcaatactgccgaggatagagtgacagcgaca
caagactgcggggataacgcggaagagggaatcatttcactcagtgcaggtgcaaatgag
gacgacgaatgcgaggagaaatcaaaagttgtgaagagacgtagctcgcttgaaagcagc
ggtgaaggcggcgcaggtgacgggagctgcttgcgccgtcataaatcgttggacggagga
ggcccgagcaatttacaaaagaacgagattgaagaaaaagagaaagacaagaaggatccg
cgaatggaacgcaggatacgaaataaggatcgcccggcaatggagatttacagacctggc
atgggtaaattcagcaagcaacgactggaacgcgaaaaatccaacaacgacgaacgagcg
tctctttcacagagccctacgccgaatgctggcacttcttccgcgcctggcaaacccggg
aaacccggagcgacggaagtgcgctcgatgacgttcaaacgcagcgtctcccgcgatgta
gcataa
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