Linepithema humile (Argentine ant): 105677744
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Entry
105677744 CDS
T04898
Symbol
Prp16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105677744 (Prp16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lhu03041
]
105677744 (Prp16)
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105677744 (Prp16)
Spliceosome [BR:
lhu03041
]
Complex C
Other components
Step II factors
105677744 (Prp16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
AAA_30
T2SSE
ResIII
AAA_16
ATPase
Sigma54_activ_2
PhoH
cobW
Sigma54_activat
AAA_7
AAA_24
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
105677744
NCBI-ProteinID:
XP_012232000
LinkDB
All DBs
Position
5:20902235..20907580
Genome browser
AA seq
1140 aa
AA seq
DB search
MSHDTNLYRLEGTDGNQTGGLVIRKKPSDHTFKKPSILGLDKLAERKRKEQSLEPLKSKS
DKSEGKDRKYRSYEEETPTHTGGVNSEAQQRLESRLKRQRLNADDRNARNSYRGRDRDRD
RDRDRDRDRDRRRDRESRGRDSSVRQTPLRFRDEPQTPKFRTKDPTSRSNWDDDEDEEPR
RSSWDHPTPNIYGNRDGRDSIRSEFTPSYKYNSWNKDFKNSGATPMVDGEEKEMWEEEQQ
RLDREWYALDDGENNAFANVSEEYTRKKEMELEARRQKRLSAQQRQINKDNELWERNRML
TSGVVSSLDHDDDFDDEGETRVHLLVHNVVPPFLDGRIVFTKQPEPVIPVRDPTSDMALV
ARKGSALVKAYREQKERRKAQKKHWELAGTHIGNIMGVHDQRKDDKERAGQETDFKAGQK
YAQHIGAGEVTGEAKHRSIQHQRRSLPVFAVRQELLNVIRENSVVIIVGETGSGKTTQLT
QYLHEDGYSRYGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCTSKDTVIK
YMTDGILLRESLREGDLERYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSAT
MDCSKFSAFFGNAATFQIPGRTFPVEVLHAKNSVEDYVDAAVKQVLQIHLQPKSGDVLVF
MPGQEDIEVTCEVLKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGFRKCVVATN
IAETSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRQGRAGRTGPGQCY
RLYTRRQYLDELLSTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQ
LWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTAEILIIVSMLSVPSIFYR
PKGREEDSDSAREKFQVPESDHLTYLNVYNQWKANGYSTSWCNDHFIHAKAMRKVREVRS
QLEEILKQQKMDVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSA
LFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRSGRAKRRQAM
LHLHEMEHQMKEAEEEMKARAQEQLEREQASVRKKEILTPGIREPGTPAPYRNTPGRLGL
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgacacaaacttgtacagattagaagggactgatggaaatcaaacaggaggt
ctagtcattcgaaagaaaccttcggatcatacttttaagaaaccatctatattaggcctc
gacaagcttgcagaaagaaaaagaaaagaacaatcactggagcctcttaagtcaaagtct
gacaaatctgagggaaaagacagaaaatatcgatcttatgaagaagaaactcccactcat
actggtggtgttaattctgaagcacaacagagacttgagtcgcgacttaagcgtcaaaga
ttaaatgcagatgacagaaatgctagaaattcatacagaggtcgtgacagagacagagac
agagacagagatagagatagagacagagatagaagaagagatagggaaagccgaggcaga
gatagtagtgtaaggcaaacgcctctgagattcagggatgaacctcagacgcccaaattc
cggacaaaagatcctacttctaggagcaattgggacgatgatgaagatgaggaaccaaga
agatcaagctgggatcatccaacgccgaacatttatggcaacagagatggccgtgacagt
atcagaagcgaatttactccttcttacaagtataattcatggaataaggattttaagaat
tccggtgccactccaatggtggatggtgaagagaaggaaatgtgggaagaggaacagcaa
aggctagacagagaatggtacgcattagatgacggagagaacaacgctttcgctaacgtg
tccgaggagtatactcgaaagaaggagatggaattagaggccaggaggcagaaacgtctt
tccgcgcagcaacgacaaataaataaggacaatgaactgtgggagcgtaaccgtatgttg
acatcgggagtggtgagctcactagatcacgatgatgactttgacgacgagggagagacg
agagtccacttgctcgttcacaatgtggttccgccgtttctggacgggcgcatcgtgttc
acgaagcagccagaaccggtcataccagtacgtgatcccacttccgacatggcactggtg
gcaaggaaaggttcagcgctggtcaaagcgtatcgcgagcaaaaggagagacgtaaagcg
cagaagaagcattgggaactggccgggacgcatatcggtaacattatgggtgtgcatgat
cagcgtaaagatgacaaggagcgtgcgggacaagaaacagatttcaaagccggacaaaag
tatgctcagcatataggagctggagaagtgacgggggaggctaaacacagatccatccag
catcaaaggagaagtcttcctgtattcgccgtacgtcaagagctattaaacgtcatcagg
gagaatagcgttgtgataatagtaggcgaaactggtagcggtaaaacgacgcaattaacg
caatacctccatgaagatggctacagccgttacggtataattggctgtactcagcctaga
agagttgctgccatgtctgttgcaaaaagagtgtccgacgaaatggccactgctctgggc
gacaaggtcggatatgcgatacgttttgaagactgcacttcgaaggacacggtcatcaag
tacatgaccgacggtattttactgagagaaagtttgagagaaggagatttggaacgttac
agcgtaattataatggacgaagctcacgaacggtcactttccactgatgtgttattcggt
cttcttagagaggttgtcgctcgacgacatgatttgaagctaatcgtaacttccgcaaca
atggactgcagcaagttctccgctttcttcggcaacgcggcaacatttcaaataccggga
cgcacgtttcccgtcgaagtgctgcatgcgaagaactcggtagaagattacgtagacgca
gctgtgaagcaagtcttgcagattcacttgcagcctaaaagtggcgacgtgctcgtcttc
atgcctggtcaagaggacatcgaagtcacttgcgaagttctgaaggaacgtttagccgaa
atcgaatcagccccgcctctttccatactgcctatctattcgcaattgccgtcggacttg
caggcgaagatcttccaacggtccgagggaggttttcgcaaatgtgtcgtggcgactaat
atagcggaaacgtcgttgacagtcgacggtatagtctttgtcgttgactcgggctactgc
aagttgaaggtgtacaatcctcgaataggtatggacgctctgcaagtgtatccggtgtcg
agggccaatgctgatcagaggcagggcagagctggtcgtactggtcccggtcagtgctac
agattgtacacgcgaagacaatacttggacgagttattgtcgacgggagttcccgagata
caacgaacaaatttggctaatacggtgctgctgctgaagtcgcttggagttcaagattta
ttggcgtttcattttatggacccaccgccgcaagataatatactgaactcgctgtaccaa
ttatggatattgggcgccctcgatcataccggacgcttgacccctctcggtcgacaaatg
gccgagtttcctttggacccgccgcaatgtcaaatgctcatagtcgcctctcagctcggc
tgcaccgcggaaatcctcatcatcgtctccatgctgtcggttccgtcaatcttctacaga
ccgaaaggacgcgaggaagattccgattcagcgcgtgagaaattccaggtaccggaatcg
gatcatctgacgtatctgaacgtgtacaaccagtggaaggcgaacggctactcaacttcc
tggtgcaatgatcacttcatacacgcgaaggcaatgcgcaaggtgcgggaggtacggtcg
caactcgaggagattctgaagcaacagaagatggacgttgttagttgcggcaccgactgg
gacatcgtgcgcaagtgcatctgttccgcttattttcaccaagcggcacgcttgaagggc
atcggcgaatacgtcaactgtcgtacgggaatgccgtgccatcttcatcccacttccgcg
ctgttcggcatgggcttcacacccgactacgtcgtctaccacgaactcgtgatgaccgct
aaagagtacatgcagtgtgttaccgcggtggacggtcattggctggccgagttgggcccc
atgttcttcagtgtgaaggaaaccggtcgaagcggacgtgcgaagcggcggcaagcgatg
ctgcatctccacgagatggagcatcagatgaaagaagccgaagaagagatgaaggcgcgc
gctcaagagcagctcgagcgtgaacaggcgtcggtccgaaagaaggaaatattaacgcct
ggcatcagagaaccaggtactcccgctccgtaccgcaacactcccggaagattaggattg
taa
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integrated database retrieval system
