Linepithema humile (Argentine ant): 105677761
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Entry
105677761 CDS
T04898
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
lhu
Linepithema humile (Argentine ant)
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lhu03041
]
105677761 (Ddx1)
03016 Transfer RNA biogenesis [BR:
lhu03016
]
105677761 (Ddx1)
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105677761 (Ddx1)
Spliceosome [BR:
lhu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105677761 (Ddx1)
Transfer RNA biogenesis [BR:
lhu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105677761 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105677761
NCBI-ProteinID:
XP_012232015
LinkDB
All DBs
Position
4:complement(7034914..7038494)
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AA seq
735 aa
AA seq
DB search
MTAFEEMGVLPEIAKAVDELDWTLPTDVQSEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDLESGKGGGATSQVQQLAHWGLSLFDRGQALAITPDGLRCQSREQKEWHGC
RANKGVSGSGKYFFEATVTDEGLCRVGWSSPQASLDLGTDNFGYGFGGTGKKSNAKQFDN
YGEAFGMHDVIGCFLDLVKGEIKYTKNGGDLGVAFTLNAQQKSQTYFPAVVLKNAEMAFN
FGAQPFKHPPPNDYVAMSSVPKESVKYNPVNSSQSQTSKSGKPTNNAPQAIVIEPSRELA
EQTYNQIQKFKTHLMDPTVRELLVIGGVNVKEQIAILNSGVDIVVGTPGRLEDLIQGGYL
SLTHCRFFVLDEADGLLKQGHTELIDRLHKQIPKITSDGKRLQMIVCSATLHAFEVKKMA
ERLMHFPTWVDLKGEDAVPETVHHVVVMVDPQTDKSWHNMRNHIETDGVHARDNVRPGNS
TAETLSEAVKMLKGEYCIRAIKEHKMDRALIFCRTKLDCDNLERFMKQCGAQQFSCVCLH
GDRKPGERKANLEKFKRQEVKFLICTDVAARGLDITGLPFMINVTLPDEKSNYVHRIGRV
GRAERMGLAISLVSSVPEKVWYHGEWCSSRGRNCYNTNLTNQGGCCTWYNEPTYLAEIED
HLNVTIQQVESDIKVPLNDFDGKVTYGEKRMAMGSGYENHVQQMAPIVSELAALESQAQI
AFLKTHVMGEQLSAQ
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgactgctttcgaagaaatgggtgttttgccggaaattgcaaaagcagtcgatgaatta
gattggacactaccaacggatgttcaatctgaggctatcccattgattttgggtggtgga
gatgtgcttatggctgcagaaactggcagcggaaaaactggtgctttctgtttgcctatt
ttgcaaatagtttgggaaactcttaaagatcttgagtcagggaaaggaggaggagctact
tcgcaagtccaacaacttgcacattggggattgagcctgtttgacagaggacaggccttg
gcaataacgccggatggtctgagatgtcagagtagagagcaaaaggaatggcacggttgt
cgtgcgaataaaggagtatcaggcagtggtaaatatttttttgaagccacagttactgat
gagggcttgtgccgagttggttggtcttcgcctcaggcttccttggatttgggaacggat
aacttcggttatggattcggtggcacaggaaagaaatcgaatgcaaagcaattcgacaat
tacggggaggcctttggaatgcacgatgtaatcggatgtttcctcgacctggtgaaggga
gaaataaaatatactaagaacggcggggacttgggcgtcgcgtttacgttgaacgcgcaa
caaaagtcgcaaacctactttccggcagtcgtgctgaagaacgccgagatggctttcaat
tttggagcgcaaccatttaagcatccgcctccaaatgattacgtggccatgtcgtcagtt
ccaaaagaatccgtcaaatacaatcctgttaacagcagtcaaagtcaaacgagcaaaagc
ggcaagccgacgaataatgcgccgcaagcaattgttatagagccttctcgtgagctagct
gaacagacttacaaccaaattcagaagtttaaaacacacctgatggatccaacagttaga
gaactgctcgttatcggtggagtaaacgtgaaggaacagattgcgattttgaattctggt
gtagacatagtagttggcacacccggacgactggaggatcttatacaaggcggctatttg
tcgttaacgcattgcagatttttcgtgctggatgaagccgatggattattgaaacaaggt
cacaccgaactgatcgatcgtctgcacaaacagattccgaaaatcacgtcggacggcaag
aggttgcagatgattgtgtgctcggcgacattgcatgcattcgaagttaaaaagatggcc
gaacgtttgatgcattttccaacttgggtggatctgaagggcgaggacgcggtgcccgag
actgtgcatcacgtcgtagtgatggtggatccgcagacggacaagtcgtggcataacatg
aggaatcacatagaaaccgatggcgtccacgcgagagacaacgtgagacctggaaacagt
actgccgagacattgtccgaagctgtgaaaatgttgaagggagagtactgcatccgcgct
atcaaggagcacaagatggaccgagcgttgatattctgcagaacgaaactcgattgcgat
aatctcgagagatttatgaagcagtgcggcgcacagcagttctcgtgcgtgtgcctacac
ggagacaggaagcccggggagcgtaaagcgaatctggagaagttcaagcgccaggaggtg
aagtttctcatctgcactgacgtggcggccagaggattggacattaccggtctgcctttc
atgataaacgtaactttgcccgacgaaaagtccaactacgtgcaccgtatcggaagagtc
ggccgagccgagagaatgggcctcgccatttctctggtcagtagcgtgcccgaaaaagta
tggtatcacggcgagtggtgttcctcgcgcggaaggaactgttacaatactaatctgacc
aaccagggtggctgttgcacgtggtacaacgaacctacgtacttggcggaaatcgaggat
cacttgaacgtgacgattcaacaagtcgagtcggacataaaagtgccgctgaacgatttc
gacgggaaagttacatacggcgaaaagagaatggcgatgggttccggttacgaaaatcat
gtgcaacaaatggctcccattgtgtccgagctggccgcgctggaatcgcaagcgcagata
gcgttcttaaagacgcacgtgatgggggagcagttgagtgcacagtag
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