Linepithema humile (Argentine ant): 105677774
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Entry
105677774 CDS
T04898
Symbol
Ski6
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105677774 (Ski6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105677774 (Ski6)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105677774 (Ski6)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
105677774 (Ski6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
105677774
NCBI-ProteinID:
XP_012232038
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Position
4:complement(6609986..6611454)
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AA seq
272 aa
AA seq
DB search
MEPDQEDSQGGLRVDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKILATVYGPHQPRS
SASRNSTKAIINCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRS
QIDVFVEILQVDGSDYCACVNAATLALIDAGIPIKNYAVGCTVTIINKPSTEDEDKTLAA
GILDANFLEECSPGVTLSVVGLSDTNNEVEVDNNGLIVVAHGAGQRLHLSRLQTLRQRAL
QGCQDIKNILDNGVRHHLTANLLPSFMHSSLE
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atggagccggatcaggaagatagtcaaggtggattacgcgtggacggtagacgggcgcta
gaattaagacaaattcgtatgcggatgggagtattcgggcaagctgacggcagtgcttac
atagagcatggcaacacgaaaattttagctacagtatatggtcctcatcagcccaggagt
agcgcatcaaggaatagtacaaaggcaatcataaattgtcagtacagtatggctgtgttc
agttttacctctggtgaacggaagcgaagaccgaggggcgattggaaatcccaagaaaga
tcagctcaactgcgacatgcgatggaagccataatacatttagaattgtatccgcgctct
cagattgatgtctttgtagaaattttacaagttgatggtagcgattactgtgcatgtgta
aatgcagcaacacttgcattaatagatgctggaattccaattaagaattatgctgtaggc
tgtactgtaaccattatcaacaaaccatcaacagaagacgaagacaagacgttagcagca
ggaattttagatgccaacttcctggaggaatgttcaccgggagttaccttgtctgttgtt
gggttatcggatacaaataatgaggttgaagtggacaacaatggattaatagtagtggcg
cacggagctggacagagattacatttatcacgcttgcaaactctccggcagcgtgcattg
caaggctgccaggacataaagaatatattggacaatggtgtgaggcatcatttaactgca
aatttattgccttcttttatgcacagttcgcttgagtaa
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