Linepithema humile (Argentine ant): 105677838
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Entry
105677838 CDS
T04898
Symbol
Rat1
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03008
Ribosome biogenesis in eukaryotes
lhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105677838 (Rat1)
09123 Folding, sorting and degradation
03018 RNA degradation
105677838 (Rat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhu03021
]
105677838 (Rat1)
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105677838 (Rat1)
03009 Ribosome biogenesis [BR:
lhu03009
]
105677838 (Rat1)
03016 Transfer RNA biogenesis [BR:
lhu03016
]
105677838 (Rat1)
Transcription machinery [BR:
lhu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105677838 (Rat1)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105677838 (Rat1)
Ribosome biogenesis [BR:
lhu03009
]
Eukaryotic type
Pre-60S particles
RNases
105677838 (Rat1)
Transfer RNA biogenesis [BR:
lhu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105677838 (Rat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
105677838
NCBI-ProteinID:
XP_012232131
LinkDB
All DBs
Position
6:complement(13119524..13204432)
Genome browser
AA seq
942 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVECIEQKQVSVDGVCIPINSAEPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKDEDEMMEAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETTEKINEIQRIRSELALKGAFLPPEKPKEAHFDSNCITPGTPFMARLSTCLHYYIH
ERLNNDPGWKNIKVILSDANVPGEGEHKIMDFIRRQRSQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPKPCDICGQLGHEMRECTGAEPNQQQEENAYGSECQYIFV
RLSVLREYLERELYMPNLPFKYDFERAVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLV
ALYKKAVYKTGGFLTDSGDVNLDRVQLIMSDLGDMEDEIFKKRQQNELAFKQREKDKKRR
HEIISNFKPKWITAGQFAPTALGQAVKPVQNARYEAYQMRVQGRNYNTNAAENTNALESM
LRPENAGNRGQKRKIEEVTADNESDDEQSHDEVRLWEDGFKDRYYESKFDVPPDNLAFRN
NVALQYVRGLCWVLRYYYQGCASWRWYFPYHYAPFASDFINIGGLSTEFEKGTVPFRPLE
QLMGVFPAASCKHVPVPWAKLMSDPRSQIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEK
RLFKALVPYYDSLTEAEKKRNIRGDDRLYVGTENSGYSFVKGLYTNRLGYNKEIEISVDG
MRGTVLLSEDCVSDGGTLPSPVRGLPVRNNKVYCVSYKDPTYSCNHIFLARKLKGAKEPP
RVLKPQDFEAMNRNNGNQWKPQIGFVRSTQSASLGQAGHRMLEHHTNHSRPPIYANIPPP
MNLYQQFHGYRSSNHQSGYGYNSASSSQTRGPWASGFRSPNYSHAPLEYQQHRNHYNNQS
QSSRNATNYQSTQQSYHNQRGNYSSTRGGGGGGHRDNWRRSM
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccagcgttttttcgttggttaagccgaaaatatccttctgttattgtcgag
tgcattgaacaaaagcaagtaagcgtagatggagtgtgtattcctataaactctgcagag
ccaaatccaaatggggtggaatttgataatttgtaccttgatatgaatggtataatacat
ccttgcacacaccctgaagataaaccggcacccaaagatgaagatgaaatgatggaagct
atttttgagtgtatcgatagattatttcgtattgtcaggccaagaaaattgctttatatg
gcaatcgatggagttgcgcccagagctaaaatgaatcagcaaagatcccgacgatttcga
gcatcaaaagaaacaacagaaaaaattaatgagatacaaaggatacgttccgaattggct
ctcaaaggagcttttttgcctcctgagaaaccgaaggaagcacattttgatagcaattgt
atcacaccgggtaccccatttatggcaagattatcaacatgcttacattactatattcat
gaacgtttgaataatgatccaggttggaaaaatattaaagtaatattaagcgatgcaaat
gttcccggtgaaggagagcataaaataatggattttattcggcgacaaagatcgcaacct
gatcacgatccgaatacacagcatgttttatgcggagcggatgccgatttaattatgttg
ggcctcgccacacacgagcctaactttactattattcgcgaggagtttaagccgaataaa
cctaagccgtgtgacatatgcggtcagttagggcatgaaatgcgagaatgtacgggcgca
gaaccgaaccagcaacaagaggaaaacgcatatggatccgaatgccagtacatattcgtg
cgattaagtgttctcagagaatatttagaaagagaattatatatgccgaatctaccattc
aaatacgattttgaacgagctgtcgatgattgggtatttatgtgtttcttcgtaggaaat
gatttcttacctcatcttccttctctggaaattagagaaggcgcaattgacaggcttgtt
gctctgtacaaaaaagcagtgtataaaactggaggttttttgaccgatagtggcgatgtt
aatctggaccgcgttcaattaataatgtcagaccttggtgatatggaggatgagattttc
aagaaaaggcaacaaaatgaattggcattcaagcaacgtgaaaaagataaaaagaggcga
catgaaatcatcagtaactttaagccgaaatggattaccgcaggacaatttgcacctact
gctcttggacaagcagtaaaacctgtacaaaatgctcgctatgaagcttatcaaatgcgt
gtgcagggtaggaattacaatacgaacgctgctgaaaatacgaatgccttggaaagcatg
ttaagacctgagaatgcaggtaatagaggacaaaaacgtaaaattgaagaagtcacagca
gacaatgaatcggatgatgagcagtcacatgatgaggtgcgactttgggaagacggtttt
aaggatcggtactatgagtctaaatttgatgtgcctcccgataatcttgcatttagaaat
aatgttgctttacaatatgtacgaggcttatgttgggtcttacgatattattatcaaggt
tgtgcgtcatggagatggtattttccatatcattatgcgccgtttgcaagtgatttcatt
aatatcggtggtctttctacagaatttgaaaagggcactgtaccatttcgtccgttagag
caattgatgggtgtatttcccgctgctagttgtaaacatgtacctgtaccatgggcaaag
ttaatgtctgatccaagatctcagattattgacttttatccagaagattttaaaattgac
ttgaatggaaagaaatttgcttggcaaggtgtggctttacttccattcgttgacgaaaaa
agattattcaaggctttagtgccatattacgatagtttgacagaagcagaaaaaaaaagg
aacattcgcggtgacgacagattgtatgttggtacagaaaacagtggctatagttttgta
aagggtttatatacaaatcgcttaggatacaataaggaaattgaaataagtgtagatgga
atgcgaggtactgtacttttatcggaagattgtgtgagtgacgggggcacattaccttca
cctgtacggggtttaccagttaggaataataaagtgtactgtgttagttacaaggatcct
acatacagctgcaatcatatttttcttgctcgtaaattaaaaggagctaaggaacctccg
cgcgtcttaaaaccgcaagattttgaagctatgaatcggaataatgggaaccaatggaag
ccacaaatcggttttgttcgatctacgcaatctgcttcgttgggacaggcaggacacaga
atgctcgaacatcacacaaaccacagtagaccgccaatctatgcgaatattccgccaccg
atgaatttatatcaacaatttcatggttatcgtagtagtaaccatcaatcaggatatggt
tacaatagtgccagttcgagtcagacacgtggaccatgggcatctggttttcgctcgcct
aattattctcacgcgcctttggaatatcaacaacatcgtaatcattacaataatcagtca
cagtcatcacgaaatgccaccaattaccagagcacacagcaaagttaccacaatcaacga
gggaattactcttcgactcgaggagggggtggaggaggccaccgtgacaattggcgacga
tcgatgtaa
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