Linepithema humile (Argentine ant): 105677870
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Entry
105677870 CDS
T04898
Symbol
Hel25E
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03013
Nucleocytoplasmic transport
lhu03015
mRNA surveillance pathway
lhu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105677870 (Hel25E)
09122 Translation
03013 Nucleocytoplasmic transport
105677870 (Hel25E)
03015 mRNA surveillance pathway
105677870 (Hel25E)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105677870 (Hel25E)
03041 Spliceosome [BR:
lhu03041
]
105677870 (Hel25E)
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105677870 (Hel25E)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105677870 (Hel25E)
Spliceosome [BR:
lhu03041
]
Complex C
Other components
EJC/TREX
105677870 (Hel25E)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105677870 (Hel25E)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105677870
NCBI-ProteinID:
XP_067208409
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All DBs
Position
3:11172511..11178393
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AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDVPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELIENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKTICPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaatgatgatcttttggattatgaagatgaggaacagactgaacaagtagtt
gatggaagcggtgatgttcctgcaaagaaggaagtaaagggcacatatgtttctattcac
agtagtggatttagagatttccttttaaagccagaaattttgcgtgccattgttgattgt
ggctttgaacatccatctgaagtgcaacacgaatgtatccctcaagcagtacttgggatg
gatatactgtgccaagcaaaatctggcatgggaaaaactgctgtatttgtattagctact
cttcaacagctggaattgattgaaaatcaagtatatgttctagtgatgtgtcacactcga
gaattagcctttcaaatcagtaaggaatatgagaggtttagcaagtacatgccacatgta
aaagttggtgtattttttggtggtttacctatacaaaaagatgaagaagtcttgaagacc
atatgtccccatattgttgtcggtacccctggtcgtatcctcgctcttgtacggaataag
aaactgaatctgaagcatctgaagcactttatacttgatgaatgtgataaaatgcttgaa
ttattagatatgcgccgggatgtacaggaaatattcagaagcacaccacatagcaaacaa
gtcatgatgttcagtgccacgttgtccaaggagatacgtcctgtctgcaaaaagttcatg
caagatcccatggaagtctatgtcgatgatgaggccaagctcactttgaacggtctgcag
cagcattacgttaaattgaaggagaacgagaaaaacaagaagttgttcgaattactcgat
gttcttgagtttaatcaggttgtcatatttgtcaagtctgtgcaaagatgcatggcttta
gcgcaacttctaacagaacagaatttccctgcaattggaattcatcgtggtatgacgcaa
gaggagcggctatctagatatcaacagttcaaagatttccaaaagcgtattttggttgcg
acaaatctgtttggacggggtatggacatagaacgtgtgaatattgtattcaattatgac
atgccggaagattctgatacatatttacatagagtggcgcgtgctgggcgttttggtaca
aagggtcttgccatcacattagtgagcgatgaaagtgacgccaagatattgaacgatgtt
caggaaagatttgacgtaaatattacagaattgccggacgaaatcgatcttgcttcatac
attgaagggcgatga
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