Linepithema humile (Argentine ant): 105677927
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Entry
105677927 CDS
T04898
Name
(RefSeq) NPC intracellular cholesterol transporter 1 homolog 1b-like
KO
K12385
Niemann-Pick C1 protein
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
lhu04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
105677927
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
105677927
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lhu02000
]
105677927
Transporters [BR:
lhu02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
105677927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
NPC1_MLD
Sterol-sensing
Patched
MMPL
DUF3040
Motif
Other DBs
NCBI-GeneID:
105677927
NCBI-ProteinID:
XP_012232256
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Position
1:30809037..30818609
Genome browser
AA seq
1247 aa
AA seq
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MKRPEVLLSFVFALLCCVLISAEDRQYYCAWYGECGEENDIKRTCVARNITAQPFNNSDA
EATLQRRCPHFFSDDSLKTCCDADQIVTMDQSMVMAENIFGRCPTCIRNMFRLICDLTCS
TEQGRFLKVTKSDLDEDGMEYVVETEIHVTEEYVTATYDSCKNMINPMSGMLAMDMACGS
HGASRCSPKLWYEYMGDIEENMFIPFQMTYVYDATDKWGAEPWNAQAKKCDEAYDDLSAP
CSCVDCPSSCPFTKWEIDSNDTFTIGDFNGYGVIAAIVIVALTILSSATYVLVKTFWKKG
SRTSVKKLNGNCTQSCQKIFEIIFALWGKAFAKHPVIVLFTASYIVLGLSYGITFLKVTV
NPIEIWAAPDSRSRIEKDYFDNRFQPFYRTEQIYIKSVGLDKIKHNTTNGVLEFGPVFNK
EFLLAVYELQEEILQIGRKKNEGLEKICYAPVQSEFTGPVTLDLCTVQSIWGYFQNDLEY
FNKTDNVNGYEINYLDDIYSCMQNPFNTNCLAPYKGPIIPALAVGGFLKEGEFEYDSSDY
IKATGLVLTFLVKNSLDEEDLAPVIKWEQRFLDFMEKWNQKSRPKFMNVAWSTEKSIEDE
LDRTSKAEMITMVISYLVMFVYIALALGKIRFSPIGYLIESKIVLSIGGIIVVIASVACS
LGVFGYVGVPTTLLTIEVIPFLVLAVGVDNIFILVQNHQRNPRRCGESIPEHIGRVVAAV
GPSILLTSTSECFCFLIGAFSSMPAVNTFAMYASLSILFNFFLQITAFVALLALDSKRTE
NNRLDVLCCISVEERSRPHADASRGLVHTIFERAYTPFLMKTPVRIIVLIVFIAALITHV
IVIPQLDIGLDQKLSMPEDSYVLKYFEYMEDLLSMGPPVYFVLTKGLNYSKAETQNIICG
GQWCNTDSLYTQIYSAAKQPDVSYLSKPASSWIDDYLDWSTIDGCCKYFLTNDSFCPHKF
DGICDTCEIIINKSISRPDEESFRKYISYFVMDIPDEFCAKAGRASYYDAINYYYDEFGL
IDVGDSYFMGYHTPLKKSSDWYESLRVARIISENITTMINNARLSNQKVKVFPYSVFYVF
YEQYLTIWQEILSSIGLSLAVIFVVTLLFTGLSLFSAVIVVFTVSTIMINIAGLMYWWNV
SLNAVSLVNLVMAAGISVEFCSHIVHSYITSTAKTRFDKASEALSITGSSVFSGITLTKI
VGIVVLAFAKTQIFRVFYFRMYLGIVLFGAIHGLIFLPVLLSFIGPV
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggccggaagtgttgctcagttttgtattcgcgctattgtgttgcgttttaatt
tcggcggaagatagacaatactactgtgcgtggtacggtgagtgtggagaagaaaatgac
attaagcgaacctgtgtagcgagaaatatcaccgcccaaccgttcaacaattcggatgcc
gaagctactttgcaaaggagatgtccgcacttcttttcggacgattcgctgaaaacgtgc
tgcgacgccgatcaaatcgtcacgatggaccagagcatggttatggccgaaaacattttt
ggcaggtgtccaacctgcataagaaatatgttccgattgatttgcgatcttacgtgcagc
actgagcaaggtcgattcttaaaagtgaccaagagtgacttggatgaagatggtatggag
tacgttgtagaaactgagattcacgtgacggaagaatacgtaactgcgacatatgattcc
tgcaaaaatatgattaacccaatgagcggcatgttagcaatggacatggcatgcggctcg
cacggagccagcagatgttctcctaagttatggtacgagtacatgggcgacatcgaggag
aacatgttcatacccttccagatgacttatgtttatgatgcaactgataaatggggcgca
gagccatggaatgcgcaagctaaaaaatgcgacgaggcttacgatgacttgtctgcaccc
tgcagctgcgtcgactgtccctcatcgtgtcccttcacgaaatgggaaattgattcaaac
gatactttcacgataggcgattttaacggttatggcgtaatagcagcgatagttatcgtt
gcgctcacaattctatcaagtgccacatatgtcttagtgaagacattttggaagaaaggt
tctagaacatcggtaaaaaagttaaatggaaactgtactcaaagttgtcaaaaaatcttc
gaaataatttttgctttgtggggaaaagcgttcgccaagcatcctgttattgtcttattc
acggcttcatacatcgttctcggattgagttatggaatcacgtttcttaaggtcactgtg
aacccaatcgaaatctgggcggcaccagacagcagatcacggatagaaaaggattatttt
gataaccgatttcagcccttttatcgtaccgaacaaatttatataaaatctgttggcctt
gacaagataaaacataatactacgaatggagttttggaatttggacctgtgtttaacaaa
gagttcctcttagctgtatacgagctacaggaagagattcttcagattggcagaaaaaag
aatgaaggattggaaaaaatctgctacgctcctgtgcaaagcgaattcactgggccggta
actctcgatctctgcacggtgcaaagtatatggggatattttcaaaacgatctcgaatat
tttaacaaaaccgataatgtgaatggatacgaaattaactatctggatgatatatactcg
tgtatgcaaaatccatttaatacaaactgtctggcgccatataaaggacccataataccc
gcattagcagtgggtggttttttaaaagaaggcgagtttgagtacgattcttctgattat
ataaaagcaacgggattggttttaaccttcttggtgaaaaattcgctcgatgaggaagat
ctcgcgccggttataaaatgggagcaacgcttcctcgattttatggaaaaatggaatcaa
aaaagtcgaccaaaattcatgaatgtcgcatggtcgacagagaaatcgatagaagacgaa
ttggacagaacttcgaaagcggaaatgataacgatggtcataagctatcttgtcatgttt
gtttatatcgctctggccctcggtaaaattagattctctcctatcggctatttaatcgaa
agcaaaatcgtattgagcatcggtggtatcatcgtagtcattgcgtcggtcgcctgttcg
ctcggcgttttcggctacgtaggcgtaccaaccactctgctcacaatcgaggtgattcca
ttcttagtgctggccgtcggagtcgacaatattttcattttggttcaaaatcatcagaga
aatcctcgacgttgcggcgaatcgattccggagcacattggcagagttgtagctgcggtc
ggaccctcgatattgttaaccagcacatccgaatgtttttgtttcctcatcggagcgttt
tcttcgatgccggctgttaacaccttcgcgatgtacgcctctttatcaattctattcaac
ttctttctgcaaataacggctttcgtcgctttactggctctcgactccaagagaactgag
aacaaccgtctggacgttctctgctgcatttccgtcgaggaaaggtcacgaccgcatgcc
gatgcaagcaggggtctcgtccatacaatcttcgagcgtgcttacacgccgtttttgatg
aaaacaccggttcgaataatcgttttgatcgtttttatcgccgctctcattactcacgtt
atagtcataccgcagctcgacatcggactggatcagaagctttcgatgcccgaggactct
tacgttttgaaatacttcgagtacatggaggatcttttgtcgatgggcccgcctgtgtac
ttcgtattgacaaaaggtctaaattacagcaaggcggaaactcagaatatcatatgcggt
ggtcaatggtgtaacactgattctttatacacacagatatattcggctgcgaaacaaccc
gacgtgtcgtatttgtctaaaccagcctcttcttggatagacgattatctggattggtcg
acgattgacggctgttgcaaatattttctcacgaacgattcgttttgcccacacaaattt
gatgggatatgtgatacatgtgagattattattaacaagagtatttcacgcccggatgaa
gaaagtttcagaaaatatatttcttactttgtaatggacattcctgacgaattttgcgct
aaagctggcagagcttcatattacgatgcgataaattattattacgatgagttcggttta
atcgatgtgggcgattcatatttcatgggctatcatacacctttgaaaaagtcatctgat
tggtacgaatcgctccgagttgctagaataatatcggagaacatcacaaccatgattaac
aatgccagactgtccaatcaaaaagtcaaagtgtttccatacagtgtcttctatgtgttc
tatgaacaatacttaaccatttggcaagaaatcttatcgtcaataggtttatctcttgcc
gtaattttcgtcgtgacgctacttttcacaggattatcgctattctctgcagtgatagtt
gtttttactgtgtcaacaataatgattaatatagcgggtctaatgtattggtggaatgtc
agcctcaacgcggtctctcttgtaaatctagttatggcggcaggtatttcggtggaattt
tgcagtcatatagtgcattcttatatcacatcgacagcgaagacgagatttgataaagca
tcggaggcgctttctatcacaggaagttctgttttttccggaatcactttgaccaaaatc
gtgggtatcgtggtgttagcatttgcgaaaacgcaaatcttccgagtattctatttccga
atgtatttaggaattgttctgtttggtgctatacacggtttaatatttttgcctgtgtta
ttaagttttataggacctgtataa
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