Linepithema humile (Argentine ant): 105678574
Help
Entry
105678574 CDS
T04898
Symbol
Spt6
Name
(RefSeq) transcription elongation factor SPT6 isoform X2
KO
K11292
transcription elongation factor SPT6
Organism
lhu
Linepithema humile (Argentine ant)
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhu03021
]
105678574 (Spt6)
03036 Chromosome and associated proteins [BR:
lhu03036
]
105678574 (Spt6)
Transcription machinery [BR:
lhu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
105678574 (Spt6)
Chromosome and associated proteins [BR:
lhu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
105678574 (Spt6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
SH2
HHH_9
HHH_3
Tex_central_region
Tex_YqgF
Spt6_S1
HTH_10
Tex_N
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
105678574
NCBI-ProteinID:
XP_012233466
LinkDB
All DBs
Position
8:5265178..5278802
Genome browser
AA seq
1762 aa
AA seq
DB search
MAEYLDSEADVSEGEEELDQNEKRKLKKFKAMEESDDEEDDDEDQIREELKDLIDDNPIE
ESEGEDSDGSDHHKKRKKSDDEDFDDRLEDEDYDLIEENLGVKLERKRFKRLRRIQDEES
EEEQEKEVDEERDAIANELFEGSGDEDERRSERSHRPEAETFEEGSDEGEYTDADDFIVD
DDGRPIAEKRKKKKPIFSDAALQEAQDIFGVDFDYDEFGKYGAEDYEEEEEEEEEDEYMD
EDVDTERPRRPKKQLKKKTTRKSIFEIYEPSELKRGHFTDMDNEIRNTDIPERMQLRSVP
VTSVPEGSDELDLEAEWIYKQAFCKPTISIQDAHLNAEAKERARKGPQTIGKIKKALDFM
RNQHFEIPFISFYRKEYVLPELNINDLWKVYKFDAKWCQLRQRKESLLKLFEKMRNYQLD
EIMKNADAPLSDNVRVIKDDDIERLKNVQTSEELNDVYHHFMLYYSHEIPAMQETVRQKE
KEARRRERLERRKQQIAEAEENGEDPPEEDEAQEEDEVDDTLKQAVRSGSYSLCRKAGLD
GLAKKFGLTPEHYAENLRDNYQRHEVDQEPTEPTTIANEYCSTQFKSEEDVLKATQLMVA
IQLAREPLVRKCVREMYMERAKVSVKPTKKGTKEIDENHPIYTMKYLKDKPVRDLVGVQF
LNLMTAEEDKLIAITFSDSIEGNTSSNYVDEMKQLYCRDEFSKLVQDWNALRVGSVEIAL
NRMVIPHLKKELRINLIAEAKECVMRACCRKMYNWIKVAPYSCEFPEEEDEEWDTGKGLR
VMGLAYVPDYSQAAFTCLVAADGECTDYLRLPHLMKRKNSYREDEKLMKEADLLALRNFI
ATKKPHVVVVAGESREAMMIAADIKECVDHLTKEEQFPAIQVEICDNELAKIYSNSNKGV
SEFRDYPELLRQAISLARRMQDPLVEFSQLCTADEEILCLRYHSLQDQLPKEELLENLYL
EFVNRVNEVGVDVNKAVQQAYCGNLVQFVCGLGPRKGQALIKMLKQTNQRLENRTQLVTA
CHMGPKVFINCAGFIKIDTNSLGDSTEAYVEVLDGSRVHPETYEWARKMAVDALEYDDED
ANPAGALEEILESPERLKDLDLDAFAEELERQGFGNKCVTLYDIRAELNSRYKDLRVPYQ
SPSAEKLFDVLTKETPETFYIGKLVLATVVGIGHRKPQGEQLDQANPVRNEETGLWQCPF
CLKNDFPELSEVWNHFDAGSCPGKATGVRLRLDNGISGYIHIKNLSDRHVANPSERVGMG
QIIHCRIIKIEVDRFSVECTSKSSDLADKNHEWRPQRDPFYDTETEQKDIKTEEDAKKAK
QRQIYVKRVIVHPSFHNISFAETVKLMQTMKQGEAIVRPSSKGADHLTVTWKVTDDILQH
IDIREEGKENAFSLGQSLWIGNEEFEDLDEIIARHVNPMAAYASELLDFKYYKPSVEGIK
DKAEEILKEQKKENPGGIPYIVSAAKNYPGKFLLSYLPRTRCRHEYVTVTSEGFRFRGQM
FSRVSDLLRWFKEHFRDPVPGQSTPSTPRGAMTSRTPYTTPGAVSGMNQEAIQRVAQNLP
HHMLHSLSQVANQTPHHYPPHTPGAAGAANYGGVHTYPNTPYTPSGQTPFMTPYQTPHHT
PHHGQPTPRYGQQTPSHHQGPFVHPPPPSMTPSHHRSTQSHRPTPPMSTPSGDPTDWKKA
AEAWARLKSGPRVSGSTPRYDESRKTPRNYDESIGRTTPSGRSRPSSTRTPSYKSPRGTP
HTNSSPRSMSLSGDGTPLYDES
NT seq
5289 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtatctggattcggaggcagatgtgagcgagggtgaggaggagttggatcaa
aatgaaaaaagaaagctcaaaaaattcaaggcgatggaggagagcgacgacgaggaagac
gatgacgaggatcagatacgcgaggagttaaaagatttgatagatgacaatcctatagag
gaaagcgagggtgaagatagcgatggttctgatcatcataagaagcgtaagaagagtgac
gatgaggactttgatgatcgcttggaagatgaagattacgatttgattgaagaaaattta
ggtgttaaacttgaaaggaaacgcttcaagcgtcttcgaaggattcaggatgaagagtcg
gaggaagagcaggagaaggaagtggatgaagaacgagacgctattgccaacgaattgttt
gaaggttctggagatgaagatgaaaggcgaagcgaacgaagccacagacctgaggctgaa
acttttgaggaaggcagtgacgaaggcgaatatactgacgcggatgattttatcgtcgat
gacgatggcagacctatcgcggagaaaaggaaaaagaagaagccgatattttccgatgca
gcgttgcaagaagcgcaggatattttcggcgttgatttcgattacgacgaattcggcaaa
tatggggcggaggattacgaagaggaagaggaggaagaggaggaggatgaatacatggat
gaagacgtcgacactgagcgtccgcggcgacctaagaagcagctgaagaaaaagacaacg
aggaagagtatcttcgagatttacgaacctagcgaattgaaacgcggccacttcaccgac
atggacaacgagatacgtaacacagatataccggaaagaatgcaattgcggtccgtgccg
gttacgtcggttcccgagggctcggacgaactggatcttgaggcggagtggatctacaag
caggcgttctgcaagcccacgatctccattcaggacgcccatttgaacgccgaggcgaaa
gaacgggcgcgaaaaggaccgcaaacgatcggcaagattaagaaggccttggacttcatg
cgtaatcaacattttgagattccttttatatccttctacaggaaggaatacgtgctgccc
gagctaaacattaacgacttgtggaaggtgtacaaatttgacgcgaagtggtgccagctg
cgccagcggaaggagagtctgctcaagctgttcgagaagatgcgcaactatcagttggac
gagatcatgaagaatgcggacgcgccactgtcggacaatgtgcgcgtgatcaaggacgat
gatatcgagcgactgaagaatgtgcagacgagcgaggagctgaacgacgtttatcatcac
ttcatgctgtactacagtcacgagatcccggcgatgcaggagaccgtgcggcagaaggag
aaggaggcgcgacgcagggagagactcgagcggcgtaagcagcagatcgccgaggccgag
gagaacggggaggatccgccggaggaggacgaggcgcaggaggaggacgaagtcgacgac
acgctgaagcaggcggtgagaagcggctcgtactcgctctgccggaaggccggcctggac
ggcttggcgaagaagttcggcctgacgcccgagcactacgccgagaacctgcgcgacaat
tatcagcgtcacgaagtggatcaggagccgaccgagccgaccacgatcgcgaacgagtac
tgcagcacgcaattcaagtccgaggaggacgtgcttaaggccacgcagctgatggtggct
attcaattggcgcgcgagcccctcgtccgcaaatgcgtgcgcgaaatgtacatggagcgc
gcgaaggtctcggtgaaaccgacgaaaaagggcacgaaggagatcgatgagaatcatccg
atttacacgatgaagtatctgaaggacaagccggtgcgcgatcttgtaggcgtgcagttc
ctgaatctgatgaccgccgaggaggacaagctcatcgccatcaccttcagcgacagtatt
gagggcaacaccagcagcaactacgtcgacgagatgaagcagctttactgccgggacgag
ttcagcaagctcgtgcaggactggaacgcgctgcgcgtcggcagcgtcgagatcgcgctc
aaccgcatggtgataccgcacttgaagaaggagctgcgcatcaatctgatcgccgaggcg
aaggagtgcgtgatgcgcgcctgctgccgcaagatgtacaattggatcaaggtcgcgcct
tacagctgcgagtttcccgaggaagaggacgaggagtgggacaccggcaaagggctgcgc
gtcatgggtctggcttacgtgcccgactactctcaggcggccttcacctgcctcgtcgcg
gccgacggcgagtgcacggattatctgcgcctgccgcacctgatgaagcgcaagaacagc
tatcgcgaggacgagaagctgatgaaggaggccgatctgctggcgctgagaaacttcata
gccacgaagaagccgcacgttgtcgtggtggccggcgaatctcgagaggcgatgatgatc
gccgccgacatcaaggagtgcgtcgatcacctgacgaaggaggagcaattccctgccatt
caagtggagatctgcgacaatgaactcgccaagatctactccaacagtaataagggcgtg
tcggagttccgggactatccggagctgctgcgccaggctatctcgctggcgaggagaatg
caggatccgctggtggagttctcgcagttgtgcacggcggacgaggagattctctgcctc
agataccacagtctgcaggatcagctgcccaaggaggagttgctggagaatttgtacctg
gagttcgtcaatcgcgtgaacgaagtcggcgtggacgtgaacaaagcggttcaacaggcg
tattgcggcaatctcgttcagttcgtatgcggtctcggcccgcgcaagggtcaagcactg
atcaagatgttgaagcagacgaatcagcggctggagaatcgcacgcagcttgtcaccgct
tgccatatggggccgaaagtgttcatcaattgtgccggttttatcaagatcgatacgaac
agtctgggcgacagtaccgaggcgtacgttgaagtgctggacggttcgcgcgtgcatccc
gagacttacgagtgggcgagaaaaatggcggtcgacgcgttggagtacgacgacgaggac
gccaatcctgctggcgcactggaggagatactcgagtcgccggaacgtctgaaggatctc
gatctcgatgcgttcgcggaggagctcgaacggcagggtttcggcaacaagtgcgtcact
ttgtacgacatcagggctgagctgaacagccggtacaaggatctgcgcgtgccgtatcag
tcgcccagcgcggagaagctgtttgacgttctgacgaaggagacacccgaaacgttttac
atcggcaagctggtattggccactgtggtcggcatcggtcaccggaagccgcagggcgag
cagctcgatcaggcgaatccggtgcgaaacgaggagaccggcctgtggcaatgtccgttc
tgcttgaaaaacgactttcccgagctgtcggaggtgtggaatcacttcgacgctggttcc
tgcccgggtaaagccaccggtgttagactgcgattggataacggtatatccggttatatt
cacattaagaatttgtccgatcgacacgtcgccaatcccagcgagagagtcggcatgggc
cagatcattcattgccgcattatcaaaatcgaggtggatcggtttagcgttgagtgcact
agcaagagcagcgacctcgccgacaagaatcatgaatggaggccgcaacgagatccattt
tacgataccgagaccgagcagaaagacataaagacggaggaagacgcgaagaaggcgaag
cagcggcaaatctacgttaagcgcgtgatcgtccatccatcgttccataacatcagcttc
gccgagaccgttaagctgatgcaaacgatgaaacagggtgaagcaatagtgagaccgagc
agcaaaggcgccgatcacttgacagtcacgtggaaggttaccgatgacatcctgcagcac
atcgatatccgcgaggagggcaaggagaacgccttttccttaggacagagtctgtggatc
ggtaacgaggagttcgaagatttggacgaaatcattgctcgacatgtcaatcctatggcc
gcttacgcttccgaattattggactttaagtattacaagccctctgtagagggaatcaag
gacaaagctgaggagatattgaaggagcagaagaaggaaaaccctggtggaatcccctat
atagtatcggcggctaagaactatcccgggaagtttctgctctcatatttgcctcgcact
cgctgccgccatgaatatgtcacggtgacgtcggagggcttcagattccggggacagatg
ttcagcagagtgagcgacttgttacgttggtttaaggaacatttcagagatccagttccg
ggacaatctactcccagcacgccgcgcggcgcgatgacttccaggacaccttatacgaca
ccgggcgcagtcagtggtatgaaccaagaggccatccagcgagtcgcgcagaatcttccg
caccatatgctgcactcgctgtcgcaggtggcgaatcaaacgccgcatcactatccgccg
cacactccgggagcagccggcgcggccaattacggcggcgtgcacacgtatccgaacacg
ccgtacacgccatccggccaaactccgttcatgaccccgtatcagacgccgcatcacacg
ccgcatcacggccagcccacacctagatacggccagcagacccccagtcatcatcaggga
ccgtttgtgcatccgccgccgccctcgatgacccccagtcatcacagatctactcagtcg
catagacctacgccgcccatgtccactccttccggcgatccgacagactggaagaaggcg
gccgaagcgtgggcacgactgaagagcggtccccgtgtctctggatcaacgcctaggtac
gatgagtcaaggaaaactccgcgtaattacgacgaatcgataggcagaacaacgccctcc
ggaagaagcagaccgtcctctacacgaaccccatcgtacaagtctccgcgcggcactccg
cacacgaattctagtccgcggagtatgtccctcagcggggacggtactcctttgtacgac
gaaagctaa
DBGET
integrated database retrieval system
