Linepithema humile (Argentine ant): 105678651
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Entry
105678651 CDS
T04898
Symbol
RtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lhu
Linepithema humile (Argentine ant)
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lhu03016
]
105678651 (RtcB)
Enzymes [BR:
lhu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105678651 (RtcB)
Transfer RNA biogenesis [BR:
lhu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105678651 (RtcB)
Prokaryotic type
tRNA splicing ligases
105678651 (RtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
105678651
NCBI-ProteinID:
XP_012233575
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All DBs
Position
2:complement(7688816..7692247)
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AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKINEHCWRIKKGFQPNMKVEGVFYVNNTLERLMFDELRNACRPGAI
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMDDPTSIVSPGGVGFD
INCGVRLLRTNLFERDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNSRDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFNLSPDDLDMHVIYDVSHNIAKVE
EHIVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQITGQPVLIGGTMGTCSYVLTGTEEGM
KETFGSTCHGAGRALSRAKSRRNLDYQQVLNKLQESGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaagacaatatcaagaggagctcaagtatttggaaaaaataaatgaacattgt
tggagaattaaaaaaggttttcaacctaatatgaaggttgaaggagtgttttatgtaaac
aatacattggagcgtttgatgtttgatgagttgcgcaatgcatgtcgaccaggtgcaatt
ggaggttttcttcctgggatgaagcagattgctaatgttgcagctctgcctggtattgta
tggagatctgttggattaccagatgtgcactctggatatggctttgctattggtaatatg
gcagcatttgatatggatgatccaacgtcaattgtatcacctggtggtgtaggttttgat
ataaattgtggtgttcgtctactacgaacaaatttattcgagagagacgttttaccagta
aaagaacaacttgcacaaagcatgtttgatcatattccagtcggagttggttcaaaagga
atcataccaatgaattcacgggatttagaagaagctctagaaatgggaatggattggtct
ctgagggaaggatacatttgggccgaggataaagaacattgtgaagaatatggaagaatg
cttaatgctgatccatccaaagtatcaatgagagctaagaaacgtggacttcctcaatta
ggtacattaggagctggaaaccattatgcagaaattcaagtagtagatgaaatatatgac
aagtgggctgcgtgtaaaatgggcattgaagaaaaaggacaagtttgtgttatgatccac
tcgggaagcagaggatttggtcatcaagttgctacagatgcgcttgtgcaaatggaaaag
gctatgaaacgtgacaacatagaaaccaacgatagacagcttgcatgcgctcatattaaa
tctcaagaaggccaggactacttaaaatcaatggcagctgctgctaattttgcgtgggtc
aacaggagttctatgacattccttagtcgacaggcatttgcgaaacaatttaacttatct
cccgatgatttagatatgcacgttatttacgacgtttctcataatattgccaaagtagaa
gaacacatagttgaaggaaaacagaaaactcttttagttcatagaaagggatcaacaaga
gcgttcccaccgcatcatcctttgattcctgtagactatcagataacaggtcaaccagtt
ttaatcggtggcacgatgggaacctgcagttatgttctgactggcacagaagagggtatg
aaagaaacgtttggatcaacatgtcacggagctggccgtgctctctcaagagctaagtca
cgtcgaaacttggattaccaacaagttctgaacaaattacaagaatcaggcatatcgata
cgagttgcttcaccgaaattggtcatggaagaagcgccggaatcctataaaaatgtaacg
gatgttgttaatacttgtcatgcagctggaatttctaagaaatgcatcaagctacgacca
attgcagttatcaagggataa
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