Lactobacillus helveticus CNRZ32: lhe_0860
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Entry
lhe_0860 CDS
T02744
Name
(GenBank) RNA-metabolising Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lhv
Lactobacillus helveticus CNRZ32
Pathway
lhv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lhe_0860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhv03019
]
lhe_0860
Messenger RNA biogenesis [BR:
lhv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lhe_0860
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AGQ23384
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Position
981535..983307
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AA seq
590 aa
AA seq
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MANQLKIMILSGVREQGKDMFAVQVNDEIFVLDAGLKYPDSSLFGIDVVIPDLDFFEQYG
DRVAGIFLTHGHADSIGALPYILRKYDIPVFGSQLSIELAKIDVQRENKHCKNSLFHVID
ADTEIDFKNASISFFHTTHSIPDSLGIDVHTPAGEIVYTGDFKFDPTAADNYRTDMDRLA
EIEQKGVLALLSDSSNAEASYPNASEQDIGNFVTNVFRNATGRIIVAAKASNLNRVQEVL
NAAKATGKRVLLTGRDLAKIVRTSMKLGYLDVPDGLLMRVKDLKTVPDNQTVILETGRMG
EPLNSLQKMAKKRHSMITIHDGDLVFIATTPSHAVETMVAETSDLVYKAGGTVIQLGRNM
HTSGHATGRDIQLLIDTLKPKFLIPVIGEYRLLEIVRSLAIKTGMSPKNIYITKNGDCLD
YDFKKKRFYLSDPVPGEDTMIDGSGVGDVGNIVLRDREVLSDDGIFIAVVTIDRKKKKII
AEPKVTSRGFVYIKANKQLMNDSIEVIKKAINSNFEHKKFDWTELKQDIRSDLEKFLYKK
TNRRPVILPVVMEVNQNRHRAMQKRNEKKQENNKTHSSNNKTRNNKEKKD
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggctaatcaactaaagattatgatcttgagtggtgtgcgtgaacaaggtaaagacatg
ttcgccgttcaagttaatgatgaaatttttgtccttgatgccggattaaagtatcctgat
agttctttatttggtatcgatgtagtaattcctgaccttgatttctttgaacaatatggt
gatcgagtagcaggaatctttttgacgcatgggcatgctgattcaattggtgcattacca
tatattttgcgtaagtatgatattccagtttttggttctcaattaagtattgaacttgct
aagattgatgttcaacgcgaaaacaagcactgcaagaacagtttgttccatgtgattgat
gcagatactgaaatcgattttaagaatgcaagtatctcattcttccatactacacactca
attcctgattcattgggaattgatgtacatactccagcaggcgaaattgtttatactggt
gatttcaaattcgatccaacagctgctgataattatcgtactgatatggatcgtttggca
gaaatcgaacaaaaaggagttcttgctcttttaagtgattcttcaaatgccgaagcttca
tatcctaatgcttcagaacaagatattggtaactttgtaactaatgtctttaggaatgca
acaggtcgaattattgttgcagctaaggcttctaatttgaatcgtgtacaagaagttttg
aatgcagcaaaagctactggcaagagagtgctcttaactggtcgtgatttggctaaaatc
gttagaacttcaatgaaattaggctatttagacgttccagatggccttttgatgagagtt
aaagatttaaagacagtgcctgataatcaaacggttattttggagactggccgaatgggc
gaaccacttaactctttgcaaaagatggctaaaaaacgtcacagcatgattactattcat
gatggtgatttagtctttattgctaccactccatctcatgcagttgaaactatggtggct
gagactagtgacttagtttataaagcaggcggaacggttattcagttaggtcgcaacatg
catactagtggtcacgcaaccggtcgtgatattcaattattgatcgatactttaaagcct
aagtttttgatcccagttattggtgaatatagattgttagaaattgttcgcagtttggct
atcaagactggaatgagtcctaagaatatttacattactaaaaacggtgattgcttagat
tacgactttaagaagaagcgtttctacttatctgatcctgttcctggtgaagacacaatg
atcgatggctcaggcgttggtgatgtgggcaatattgttttgcgtgaccgtgaagtgctt
tccgatgatggtattttcattgctgtagttacgattgatcgtaagaaaaaaaagattatt
gcagaacctaaggtaactagtcgcggatttgtttacattaaagctaataaacaattgatg
aatgattcaattgaggtaatcaaaaaggcgattaacagcaatttcgaacacaagaagttt
gactggacagaattaaagcaagatattcgtagcgatttggaaaaattcttatataagaag
acaaatcggcgcccagttattttgccagttgtaatggaagtaaatcaaaatcgtcatcgt
gcaatgcaaaagcgcaatgagaaaaaacaggaaaacaataagacgcattcgtcaaataat
aaaaccagaaataataaagaaaagaaagattaa
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