Liquorilactobacillus hordei: BSQ49_02535
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Entry
BSQ49_02535 CDS
T06631
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lhw
Liquorilactobacillus hordei
Pathway
lhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ49_02535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhw03019
]
BSQ49_02535
03009 Ribosome biogenesis [BR:
lhw03009
]
BSQ49_02535
Enzymes [BR:
lhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSQ49_02535
Messenger RNA biogenesis [BR:
lhw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSQ49_02535
Ribosome biogenesis [BR:
lhw03009
]
Prokaryotic type
rRNA helicases
BSQ49_02535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AUJ29178
UniProt:
A0A3S6QMX9
LinkDB
All DBs
Position
550296..551813
Genome browser
AA seq
505 aa
AA seq
DB search
MKFTELGLSENILKAINRSGFEEATPIQAETIPLVLKGEDVIGQAQTGTGKTAAFGLPIL
NKIDTKKNEIQAVIVSPTRELAIQTQEELYRLGRDERAKVQVVYGGADIRRQINSLKKAP
QILVGTPGRLLDHIRRRTVKLDSVNVMVLDEADEMLDMGFVEDIESIIEAVPEKRQTLLF
SATMPPAILKIGEKFMQKPSVVKIKAKELTTDLVDQYYVRSRDFEKFDVMTRILDVQAPE
LTIVFGRTKRRVDELSKGLEARGYNAKGIHGDLSQQRRMSILKQFKAGKLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGVSVTFVTPNEMDYLRVIEKLTKK
RMSNLKPPTEQEAFNGQITSAIDDIDDLIKKTDTQKFEKQTTELLAKYDTQDLVAALLNE
MTKDAANEVPVKITPERPLPRHKKGSSNHYDRNRRGNKGGYQRRDNKSGNHKSNNGRKPK
KDQNRDKFNRDNKKKRKFTIRTKEG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaacttggtctttcagaaaatatcttaaaggcaataaaccgtagtggg
tttgaggaagcaacacctattcaggcagaaacaattccattagttttgaagggtgaggat
gttattggacaagctcaaactggtacaggaaagactgccgcttttggattaccaatttta
aataaaattgatacaaagaaaaatgaaatacaagctgtaattgtttcacctacgcgtgaa
ttggcaattcaaacacaagaagagttatatcgtttaggtcgcgatgaacgtgctaaggta
caagttgtatacggtggagcagatattcgccgacagattaattctttaaagaaggctcca
caaattttggttggtacaccaggacgccttttggatcatattcgaagaaggactgttaaa
ctcgattctgttaacgtaatggtattagatgaagctgatgaaatgcttgatatgggattc
gttgaggatattgagagtattattgaggctgttccagaaaaaagacaaacattgttattt
tctgcaacgatgcctccagctattctgaaaattggcgaaaagtttatgcaaaagccaagt
gttgtcaaaattaaagcaaaagaattaacaactgatttggtagatcagtattatgttcgt
tcacgtgacttcgagaaatttgatgtaatgacaagaattcttgatgttcaagcacctgaa
cttacaattgtctttggtagaactaaaagacgtgttgatgaactctcaaaaggattagaa
gctcgtgggtataatgctaagggaattcatggggatttgtcacagcaacgtcgtatgagc
atcctgaaacagtttaaagcagggaaattagatattttagttgctactgatgtggcagca
cgtggtcttgatatctctggtgtcactcacgtgtataattatgatattccacaagatcca
gaaagttatgttcatcgtattggccgtacaggtcgtgcgggacatcatggtgtctcggtt
acttttgttaccccaaatgaaatggattatttacgcgttattgagaagttgacaaagaag
cgcatgagtaatttaaagccacctacagaacaagaagcattcaatgggcaaattacatca
gcgattgatgacattgatgatctaattaagaaaactgatactcagaagtttgaaaaacaa
acaactgaattgttagcaaaatatgatacacaagatcttgtagcagctttgttgaatgaa
atgacgaaagatgctgcaaatgaggttcctgttaaaataacacctgagcgcccattacca
aggcacaagaagggttcttctaaccattacgatcgtaaccgccgaggcaataagggtggt
tatcaaagaagagataataaatcaggtaaccataagagcaataatggacgtaagccaaaa
aaggaccaaaatcgtgataagtttaatcgcgacaacaaaaaaaagagaaagtttactatt
agaactaaagaaggctaa
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