Liquorilactobacillus hordei: BSQ49_03540
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Entry
BSQ49_03540 CDS
T06631
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lhw
Liquorilactobacillus hordei
Pathway
lhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ49_03540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhw03019
]
BSQ49_03540
Messenger RNA biogenesis [BR:
lhw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSQ49_03540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
KH_2
Propep_M14
Motif
Other DBs
NCBI-ProteinID:
AUJ29354
UniProt:
A0A3Q8CYA6
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Position
757389..758954
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AA seq
521 aa
AA seq
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MILTIIILAIAIITFGIGFAGGIVAHKKSYEKTLDIATQTAQGILKNAEKEAETQKKEAI
LEAKDESHRYRGEIENELKERRSEVQKQENRLLQREENLDRKDGILEKREQGLTQKENHM
EQQQKEIEKKEAKADALVHEQELELERVAELTHEEARKVVMSETKEALSHEMAVMIKDSE
DEAKASADRTARILIAQAIQRSAADTVSETTVSVVSLPNDEMKGRIIGREGRNIRTLETL
TGIDLIIDDTPEAVVLSGFDPIRREIAKMTLEKLIQDGRIHPARIEEMVEKSTKEMDAKI
RDIGEEAIFELGLHSIHPDLIKTIGRLKFRTSYGQNVLDHSIEVAKIAGVLASELGEDVT
MAKRAGLLHDIGKAIDHEVDGSHVQIGVELTKKYHESDTVINTIASHHGDVEAKYTIAVL
VAASDAISAARPGARSESLESYIHRLEKLEEITNAFDGVKKSYAIQAGREVRVIVKPNEV
SDLESTVLARDIKNQIEEEMEYPGHIKVTVIREIRAIEYAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
ttgattttaacaattattatcctcgccatcgctattataacttttggaattggatttgct
gggggcatcgtggctcataagaagagttacgagaaaacactcgatattgctacgcaaact
gcgcaaggaattttgaagaatgctgaaaaagaggcagagacacaaaaaaaagaagctatt
ttagaagctaaggatgaaagtcatcgttatcgtggcgagatagaaaatgaattaaaggaa
cgtagatcggaagttcaaaaacaagaaaatcgtttactgcaaagagaggaaaacctagac
aggaaagacgggatacttgaaaaacgtgaacaaggattgacccaaaaagagaatcatatg
gagcagcagcaaaaagaaatagaaaaaaaagaagctaaagctgatgcattggttcatgaa
caagagttagagttagagagagtcgcagagttaacacatgaggaagctcgtaaggtagtg
atgtctgagactaaagaagcattaagccatgagatggcagttatgattaaagacagtgag
gatgaggccaaagctagtgctgaccgaactgctcgaattttaattgcacaggctattcaa
agaagtgcagcggacactgtttcagagacaactgtgtcggtggtttcattaccgaacgat
gagatgaagggacgtattattggtcgcgaaggtcgaaatattcgaacgttagaaacatta
acgggaatagacttaattattgatgatactccagaagcggttgttttgagtggatttgat
ccaattagaagagaaatcgctaaaatgacacttgaaaaattaattcaagatggtcgaatt
catcctgctagaattgaagagatggtcgaaaaatcaacaaaagagatggatgcgaagatt
cgcgatattggtgaagaagccatctttgaattgggattacactcaattcatcctgatttg
attaaaacaattggtcgtttgaagtttcggactagttatggtcaaaatgttcttgatcat
tcgattgaggttgcaaaaatagcaggtgtattggcctctgaattaggcgaagacgttact
atggcaaagcgggcaggtttattgcatgatatcggtaaggctattgatcatgaggttgat
ggttcacatgttcagattggtgttgaacttaccaaaaagtatcatgaaagtgacactgtt
attaatacaattgcttcacatcacggtgatgttgaggctaagtatacaattgctgtttta
gttgcagcttcagatgcaatttctgctgcgagacctggtgctcgaagtgaatcacttgaa
agttatattcatcgtcttgaaaaacttgaggaaattactaatgcttttgatggtgtcaag
aagagttatgcaattcaggctggacgtgaagtgcgtgtaatcgtaaaacctaatgaggtt
agcgatttagagtcaacggtgttggcacgagatattaaaaatcaaattgaagaagagatg
gaatatcctggacatatcaaagttactgtcatcagggaaattcgtgcgattgagtatgct
aaataa
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