Liquorilactobacillus hordei: BSQ49_06390
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Entry
BSQ49_06390 CDS
T06631
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lhw
Liquorilactobacillus hordei
Pathway
lhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ49_06390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhw03019
]
BSQ49_06390
03400 DNA repair and recombination proteins [BR:
lhw03400
]
BSQ49_06390
Enzymes [BR:
lhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSQ49_06390
Messenger RNA biogenesis [BR:
lhw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSQ49_06390
DNA repair and recombination proteins [BR:
lhw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BSQ49_06390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AUJ29851
UniProt:
A0A3S6QP89
LinkDB
All DBs
Position
complement(1316944..1318380)
Genome browser
AA seq
478 aa
AA seq
DB search
MDDLELKQLLKQYFGYTEFKTGQAEIIKNLLSNNSTLGILPTGTGKSLCYQLTGKIIKKT
VLIISPLLSLMNDQVEQLKYAGEKRVVALTSELSYSEKNFILANIAWYAFIYVSPEMLRS
DKVMEELLKIEIGLVVVDEAHCISQWGPDFRPDYLRIKNFRKLLHNPLTLALTATATSEV
SHDIQDNLFDNNEDIRVIRYSVDRPNIFLAVHESPSTAEKNMYLTELIAQLAGPGIIYFS
SKKQANKISEMIGLKTNLRAAPYHADLSVMNRYTIQHQFMENQLDIVCATSAFGMGINKQ
DVRYVIHYHLPSDIESYVQEIGRAGRDGKKSLAVLLYSKSDIGLQQQLSVDSLPDEFDIE
HFKDTGEQDNLSNKERILQYYFNQNMEISRIKELFLKRRKVKFEKLKILLGYIINDGCKR
EYLLKYFGEKSIPEHNNSCCQLKTDPLNFNEFKFEKKVSQNDSLLNYKTILESFFKTS
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
ttggatgatctagagttaaaacaattgctgaagcaatactttggatatactgaatttaag
actggtcaagccgaaattatcaaaaacttactttcaaataattcaaccttgggtattcta
ccaacgggtacaggcaagtctttatgctaccagctaaccggtaagattattaagaagacc
gtactaataatatcaccgttactatctttgatgaatgatcaggtagagcagttaaaatat
gctggtgaaaaaagggttgttgcattgacatctgagttatcatatagtgaaaaaaatttt
attttagccaacattgcgtggtacgcatttatttatgtatctccagaaatgttaagaagt
gataaggtcatggaggagttattaaaaattgaaattggccttgtagttgtggatgaagca
cattgtatttctcaatggggtccagactttcgtccagattatttacgaataaagaatttt
agaaagttattacataatccgctaacgcttgctttaactgcaacagcaacaagtgaagtt
tcccatgatatccaagataatttgttcgacaataatgaagacatacgggtaatccgttat
tcagttgatcgaccaaatatttttttggctgtccacgaatcaccttccaccgcggaaaaa
aatatgtatttgacagagttaattgcgcagctcgctggaccaggaataatttatttttca
agcaaaaaacaagcaaataaaattagtgaaatgataggattaaaaacaaatttacgggca
gctccataccatgccgatttaagtgtaatgaaccgttatacaattcagcatcagtttatg
gaaaatcaactagatattgtctgtgccaccagtgcttttggaatggggataaataaacaa
gatgtgcggtatgttatccattatcatcttccaagtgacatagaaagttatgttcaagag
attggacgagcaggtagggatgggaagaagagcctcgcagttttattgtattcaaaatca
gatataggattgcaacaacagcttagcgtggatagtttacctgatgaatttgatatagaa
cattttaaggatacaggtgaacaggacaatttgtctaataaagaaagaatattgcaatat
tattttaatcagaatatggaaattagtagaattaaggaactgtttctcaaaagacgtaaa
gtaaaatttgagaaattaaaaatacttttggggtatattataaatgacggctgcaaaaga
gaataccttctaaaatattttggggaaaaaagcatacctgagcataataacagctgttgt
caattaaaaacagatcctttgaattttaacgaatttaaatttgaaaaaaaagtatctcaa
aatgattcactacttaattataaaacaattcttgaatctttctttaaaacttcatga
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