Liquorilactobacillus hordei: BSQ49_07260
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Entry
BSQ49_07260 CDS
T06631
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lhw
Liquorilactobacillus hordei
Pathway
lhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ49_07260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhw03019
]
BSQ49_07260
Messenger RNA biogenesis [BR:
lhw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSQ49_07260
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
SBD_N
Lactamase_B_6
BHD_3
Motif
Other DBs
NCBI-ProteinID:
AUJ30012
UniProt:
A0A3Q8CYS2
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All DBs
Position
complement(1488640..1490328)
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AA seq
562 aa
AA seq
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MSDIKIIPLGGVRENAKNMYAVVVSDEIFILDCGLKYPENGLLGIDTVIPDFSFLRENAS
KIVGVFLTHGHADAIGALPYFLSEFDVPVFGTELTIELAKITVHDEEKTKKFTDFHVVND
QTEIDFENATVSFFKTTHSIPESCGIVVKTDKGSIVYTGDFKFDQTATNGYRTDFGRLAE
IGKNRVLALLSDSANAENPNTPVAEHEIYEFINENFEYRKGRIVVACVASNIMRVQQVFD
AAAQNNRKIILTGHDAEEIINTALRLEKLHLSNDELLVPLSDIEKVPDENLIILETGRSG
EPLKSLQKMALGKHKNISLKKGDLVFITTTPSHAMETAVAKTRNMIYRAGADVKAISDEL
NSSGHASRNDLQLMMNLLKPKYVIPVQGEYRLLAANSRCAQEIGISKDNIFITSKGDIIE
YDHDKLLLASSVEVGNTLIDGSGVGDIGNIVLRDRKILSEDGVFVAVVTIDRRKKKIVDS
PQITSRGFVYVKTSRDLIAESATIVTEAVQKNLDNKEFDWGHLKQDVRDQLNHFLYEHTK
RHPVILPVIMEINQHKHFSKKK
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataaaaatcattccacttggtggtgtgcgtgaaaatgcaaagaacatgtac
gctgttgtggtgagtgatgagatatttattttagactgtgggctgaagtatcctgaaaat
ggattacttggaatagatactgttattccggactttagctttttaagagaaaacgcaagt
aaaattgttggagtgtttttaacacatggacatgctgatgcaattggagctttgccatat
ttcttgagtgagttcgatgttcctgtttttggaactgaattgacaattgaattggcgaaa
atcacagtacatgatgaggaaaaaacaaagaagtttactgattttcacgttgttaatgat
caaactgaaattgactttgaaaatgcaactgtttccttttttaagacgacacattctata
cctgaatcatgtggaatagttgtcaaaacagacaagggaagtatcgtatatactggtgac
tttaagtttgatcaaactgcaactaacggatatcgtacggattttggaagacttgctgaa
attgggaagaacagagttttggctttattaagtgattctgcaaatgcggaaaatccgaat
acaccagttgctgagcatgaaatctatgaatttattaacgagaattttgagtatcgtaaa
ggcagaattgtagttgcctgtgttgcttcaaatataatgcgtgtacaacaagtctttgat
gcagctgcacagaacaatcgtaaaattattttaactggtcatgatgctgaagaaataatc
aatactgctttaaggttagaaaagttgcatctttcaaatgatgaattgttggtaccactt
tccgatattgaaaaagtccctgatgaaaatttgattatacttgaaactggtcgttcaggt
gaacctttaaaatcattgcaaaaaatggccttgggtaaacacaaaaatatctcattgaaa
aaaggagatttagtctttattacgacaactccttcacatgctatggaaacagcggttgct
aaaactagaaatatgatttatcgagcaggagcagatgttaaggctatctcagatgagtta
aattcttctggtcatgcaagtcgtaatgatttgcaactgatgatgaatttacttaagcca
aagtacgttattcctgtgcaaggtgaatatcgtctgttggctgctaacagtagatgtgca
caagaaattggcatttctaaagataatatcttcattacgtctaaaggtgacattattgaa
tatgatcacgataagttattattagctagttcggttgaagttggtaatactctgattgat
ggtagtggtgtgggagatataggaaatattgttttgcgagaccgtaaaattctttcagaa
gacggtgtctttgttgctgtagtaacaattgatagaagaaagaaaaaaattgttgatagt
cctcaaattacatctcgtggttttgtttatgttaagacaagtcgtgatttgattgcagag
agtgcaactattgtaacagaagccgtccaaaaaaatctagacaacaaggaatttgactgg
ggacatttaaaacaagatgtgcgtgatcagctcaatcatttcttatatgaacatacgaag
aggcatcctgtgattttaccagttatcatggaaataaatcagcataagcatttttcaaaa
aagaaataa
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