Liquorilactobacillus hordei: BSQ49_07380
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Entry
BSQ49_07380 CDS
T06631
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lhw
Liquorilactobacillus hordei
Pathway
lhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ49_07380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhw03019
]
BSQ49_07380
Messenger RNA biogenesis [BR:
lhw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSQ49_07380
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
SIS_2
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
AUJ30036
UniProt:
A0A3S6QPX3
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Position
1512554..1514230
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AA seq
558 aa
AA seq
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MKKPSVKNNETAVFAVGGLGEIGKNTYGVQFQDEIIVVDAGIKFPEDELLGIDYVIPDYQ
YLVANQQKIKALVITHGHEDHIGGIPYLLKQVNVPIYAGPLALALIKGKLEEHGLLRTTE
LHEIDEDTVLKFRKTSVSFFRTTHSIPDTLGVAVKTPSGTVVVTGDYKFDLTPVTNQPPN
LQRMAKLGSDGVLCLLSDSTNAEIPNFTKSERWVGKSIRHIFEKVEGRIIFATFASNISR
VQQAAEAALAKGRKIAVFGRSMEAAIVNGRELGYLNIPDDALVDAREINSLPANKVMILC
TGSQGEPMAALSRIANGTHRQVAIQPGDTVIFSSSPIPGNTLSVNHVINELEEAGAEVIH
GKVNNIHASGHGGQEEQKLMLRLMKPKYFVPVHGEYRMLKIHTELAEKCDVPLDNSFIME
NGDVLALTKDSARMAGHFNANDVYVDGSGVGDIGNVVLRDRKVLSEEGLVIVVATLDLSK
KEILAGPDLLSRGFIYMRESGELIERGRKRLFHVIRKNLGKPNLSESMLKDAIIEDLRAF
LFEQTERYPMIIPMLVIV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagcctagtgtcaaaaacaacgagactgcggtttttgctgttggtggcttaggg
gaaattgggaagaacacttatggtgttcaatttcaagatgagattattgttgtcgatgct
ggaataaaatttccagaagatgaattattaggtatagactatgttatacccgactaccaa
tatcttgttgccaatcagcaaaaaatcaaagctcttgttattacgcatggtcatgaagac
catattggcggtatcccttatttactaaaacaagttaatgtacctatttatgccggtcct
ttagcacttgcactcatcaaaggaaaacttgaagaacatggattgttaagaactactgag
ctacatgaaattgatgaagatacagtgttaaaattccggaagacaagtgtttcatttttt
agaactactcattcaattcctgatacattaggtgtggctgttaaaacacctagtgggaca
gttgtagttactggtgactataaattcgacttaacacctgtgacgaatcagccacctaat
ttacaaaggatggccaaattaggtagcgatggtgtcttgtgtcttttatctgatagcaca
aatgctgaaattcctaattttaccaagtctgaacgctgggtaggtaagtctattagacat
atctttgaaaaggttgaaggacgtattatctttgcaacctttgcctccaacatttcgcgt
gttcaacaggctgctgaagctgcactagcaaaaggacgtaaaattgctgtttttggaaga
agtatggaggcagcaattgtcaatggacgagaactaggctaccttaatattcctgatgat
gcactcgttgatgcacgagaaattaatagtcttcctgcaaataaggtcatgattctttgt
actggttcccaaggtgaacctatggcagcgttaagccgaattgctaatggaacgcacaga
caagttgcaatccagcccggtgatactgttattttctcaagttcacctattccaggaaac
accttgagtgttaatcatgttatcaatgaattagaggaagcaggagctgaagttattcat
ggtaaagtaaataatattcatgcttctggtcatggtggtcaagaagagcaaaaattaatg
ctacgtttgatgaaaccaaaatattttgtacctgttcatggtgagtatcgaatgttaaaa
attcacacggaacttgctgaaaaatgtgatgtccctctcgacaattcatttatcatggaa
aacggggatgttttagcactcacaaaagattctgctcgcatggctggacacttcaatgca
aatgatgtttacgttgatggctcaggcgttggtgatatcggtaatgttgtattacgtgat
cgtaaggtcctttctgaggaaggtttagtaattgttgttgcaacacttgatctttcgaaa
aaagaaatcttagctggtcctgatttattatctcgtggattcatttatatgcgtgaatct
ggtgaattaatagaacgtggtcgaaaacgtctttttcatgtaattcgcaaaaatttaggg
aaaccaaatttgagtgagtcaatgttgaaagatgcaatcattgaggacttaagggcattc
ttatttgaacaaactgaacgttatccaatgattataccaatgcttgtaattgtgtag
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