KEGG   Lysobacter helvus: LYSHEL_03540
Entry
LYSHEL_03540      CDS       T07483                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
lhx  Lysobacter helvus
Pathway
lhx02024  Quorum sensing
lhx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lhx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LYSHEL_03540 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LYSHEL_03540 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lhx03019]
    LYSHEL_03540 (hfq)
   03036 Chromosome and associated proteins [BR:lhx03036]
    LYSHEL_03540 (hfq)
Messenger RNA biogenesis [BR:lhx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LYSHEL_03540 (hfq)
Chromosome and associated proteins [BR:lhx03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LYSHEL_03540 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: BCT94483
UniProt: A0ABN6G425
LinkDB
Position
complement(359844..360131)
AA seq 95 aa
MSKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAIS
TVVPARNVRVGPGGGYVQAADGSESGPGDEGDEVE
NT seq 288 nt   +upstreamnt  +downstreamnt
atgtcgaagggccaatccttgcaggacccgttcctgaacgcgctgcgccgcgaacgcgtg
ccggtctcgatctacctcgtcaacggcatcaagctccagggcacgatcgaatcgttcgac
cagttcgtcgtcctgctccgcaacaccgtcagccagatggtctacaagcacgcgatctcc
accgtggtgccggcgcgcaacgtgcgcgtgggcccgggcggcggctacgtgcaggccgcc
gacgggtcggagagcgggccgggcgacgagggcgacgaggtcgagtaa

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