Lysobacter helvus: LYSHEL_04180
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Entry
LYSHEL_04180 CDS
T07483
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lhx
Lysobacter helvus
Pathway
lhx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LYSHEL_04180 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhx03019
]
LYSHEL_04180 (deaD)
03009 Ribosome biogenesis [BR:
lhx03009
]
LYSHEL_04180 (deaD)
Enzymes [BR:
lhx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LYSHEL_04180 (deaD)
Messenger RNA biogenesis [BR:
lhx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LYSHEL_04180 (deaD)
Ribosome biogenesis [BR:
lhx03009
]
Prokaryotic type
rRNA helicases
LYSHEL_04180 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
DUF6702
Motif
Other DBs
NCBI-ProteinID:
BCT94547
LinkDB
All DBs
Position
complement(429133..430965)
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AA seq
610 aa
AA seq
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MSTPDGEPAASLRFADLGLPPAIMAAVEAVGYETPSPIQAATIPALLENRDVLGQAQTGT
GKTAAFALPILARIDLTKTKPQALVLAPTRELAIQVAEAFQKYAAHMPGFHVLPIYGGQS
YQPQLSALKRGVHVVVGTPGRVIDHLERGSLDLSGLTSLVLDEADEMLRMGFIDDVETVL
KKTPEGRRVALFSATMPSQVRRIAQTYLRNPVEVTIQAKTTTATNIRQRYWFVAGMHKLD
ALTRILEAEPYEAMIVFARTKLGTDELAQKLQARGLAAAAINGDVEQKLRERTIQRLKDG
ELDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREK
GMLRAIERATRQPITEMQLPSVEAVNDRRVAKFLSRIGEALQTEGELDTYRDLVLRYQRE
HDVPLHDIAAALAKLVQGKTPLLLEPEKPRPAFERTERPDRAPRQDRASFDRPERPAFDR
GDRGERPGAPRPPRKDVGPRSAPDAGMETYRIEVGHRHGVKPGNIVGAIANEADLESKYI
GRIDIHDDFSLLDLPEGMPPELMTHLKKVRVAGQPLRISRMGEGGNTLPAHTPRSAPPRA
PHRKGPPPRR
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacccctgacggcgagcccgccgcgtccctgcgattcgccgacctcggcctgccc
ccggccatcatggccgcggtcgaggccgtgggttacgagaccccatcccccatccaggcc
gcgaccatccccgcgctgctggagaaccgcgacgtcctgggccaggcccagacgggcacc
ggcaagacggccgcgttcgcgctgccgatcctggcgcgcatcgacctcaccaagaccaag
ccgcaggccctggtgctcgcgcccacgcgcgaactggccatccaggtcgccgaggccttc
cagaagtacgccgcgcacatgcccggcttccacgtgctgccgatctacggcggccagagc
taccagccgcagctctccgcgctcaagcgcggcgtgcacgtggtggtgggcacgcccggt
cgcgtgatcgatcacctcgaacgcggctcgctggatctctccggcctgacctcgctggtg
ctcgacgaagccgacgagatgctgcgcatgggtttcatcgacgacgtcgagaccgtgctg
aagaagacgccggaaggtcgtcgcgtcgcgctgttctccgccacgatgccctcgcaggtg
cgccgcatcgcgcagacctacttgcgcaatccggtcgaagtgaccatccaggcgaagacc
accacggcgaccaacatccgccagcgctactggttcgtcgccggcatgcacaagctcgat
gcgttgacgcgcatcctggaagccgagccgtacgaggcgatgatcgtgttcgcgcgcacc
aagctgggcaccgacgaactcgcgcagaagctgcaggcgcgggggctcgccgccgccgcg
atcaacggcgacgtcgaacagaaactgcgcgaacgcaccatccagcgcctgaaggacggc
gagctcgacatcctcgtggccaccgacgtcgccgcgcgcggcctggacgtggaacgcatc
agccacgtgctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggc
cgtaccggccgcgcgggccgcagcggcgaggcgatcctgttcgtgacgccgcgcgagaag
ggcatgctgcgcgcgatcgagcgcgccacgcgccagccgatcaccgaaatgcagttgccc
agcgtcgaagccgtcaacgaccgtcgcgtcgcgaagttcctttcgcgcatcggcgaagcg
ctgcagaccgaaggcgaactcgacacgtatcgcgacctcgtgctgcgctaccagcgcgaa
cacgacgtgccgctgcacgacatcgccgccgcgctcgccaagctggtgcagggcaagacg
ccgttgctgctggaaccggagaagccgcgtcccgcgttcgaacgcaccgagcggcccgac
cgcgcgccgcgccaggaccgcgcgagcttcgaccgtccggaacgcccggccttcgatcgc
ggcgaccgtggtgaacgcccgggcgccccgcgtccgccgcgcaaggatgtcggcccgcgt
tcggcgcccgacgccggcatggagacgtaccgcatcgaagtgggccaccgccacggcgtg
aagcccggcaacatcgtcggcgcgatcgcgaacgaagcggacctggagagcaagtacatc
ggccgcatcgacatccacgacgacttctcgctgctcgatttgcccgaaggcatgccgccg
gaactgatgacgcacctgaagaaagtgcgcgtggccggccagccgttgcggatcagccgg
atgggcgagggcggcaacacgttgccggcgcacacgccgcgcagtgcgccgccgcgggcg
ccgcatcggaaggggccaccgccccgtcgctga
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