Lysobacter helvus: LYSHEL_10670
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Entry
LYSHEL_10670 CDS
T07483
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lhx
Lysobacter helvus
Pathway
lhx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lhx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LYSHEL_10670 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhx03021
]
LYSHEL_10670 (rpoD)
Transcription machinery [BR:
lhx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LYSHEL_10670 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Duffy_binding
BD-FAE
Motif
Other DBs
NCBI-ProteinID:
BCT95196
UniProt:
A0ABM7QCC3
LinkDB
All DBs
Position
1088640..1090541
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AA seq
633 aa
AA seq
DB search
MPGSFKPSSWWRTYMATERQAPQSDIKQLISKGLEQGYLTYAEVNDHLPDDVVDPEQIED
IIGMINGMGIEVHEVAPDAETLLLAGSSGGGREVDDTAAEEAAAALTALDSEGGRTTDPV
RMYMREMGTVELLTREGEIAIAKRIEEGLNQMLGALASFPWSIQLLLEEYDLHKGGKKRL
AEIVAGFNDIEEPVPEIPAVAEVADDAAETEEEEVEEAAAEEAEETGPTGPDPAEVLRRM
DNMAALYQKFQKSYAKNGPVAKPVAKLREEMAEVFMTFKLPLPLTDTLVRKLRDVVGEIK
DHERRILDLATRVAKMPRKDFLRAWEGNQTNLGWVDEVLKRKQKWSSGLRDVKDQIVAEQ
EATIAVESALYLTLADIKDISRTMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQF
LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
KLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGD
FIEDTNVESPIESTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFD
VTRERIRQIEAKALRKLRHPSRSEQLRSFLDID
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgccgggttctttcaaaccctcatcatggtggcgcacctacatggcaaccgaacgccag
gccccccagtccgacatcaagcagctgatcagcaagggcctggaacagggttacctgacc
tacgccgaagtcaacgatcacctgcccgacgacgtcgtcgatcccgaacagatcgaagac
atcatcggcatgatcaacggcatgggcatcgaggtgcacgaagttgcgcccgacgctgaa
accctgctcctcgccggctcgtccggcggcggccgcgaagtcgacgacaccgcggccgaa
gaagccgccgccgcgctcaccgcgctggattccgaaggcggccgcaccaccgaccccgtg
cgcatgtacatgcgcgagatgggcacggtcgagctgctgacgcgcgaaggcgaaatcgcc
atcgccaagcgcatcgaggaaggcctcaaccagatgctcggcgcactggcgagcttcccg
tggtccatccagctgctgctggaggaatacgacctgcacaagggcggcaagaagcgcctg
gcggaaatcgtcgcgggcttcaacgacatcgaggaacccgtgccggaaatcccggccgtg
gccgaagtggccgacgacgccgccgagaccgaagaagaagaagtcgaggaagccgccgcc
gaggaagccgaagaaaccggccccaccggcccggacccggccgaagtgctgcgccgcatg
gacaacatggccgcgctgtaccagaagttccagaagtcgtacgcgaagaacggccccgtc
gccaagccggtcgccaagctgcgcgaggagatggccgaggtcttcatgaccttcaagctc
ccgctgccgctcaccgacacgctggtgcgcaagctgcgcgacgtcgtgggcgagatcaag
gaccacgagcgccgcatcctcgacctcgccacgcgcgtggcgaagatgccccgcaaggat
ttcctgcgcgcctgggaaggcaaccagaccaacctgggctgggtggatgaagtcctcaag
cgcaagcagaagtggtcgtcgggcctgcgcgacgtcaaggaccagatcgtcgccgagcag
gaagccacgatcgccgtggaatccgcgttgtacctgacgctggccgacatcaaggacatc
agccgcacgatggcctacggcgaagccaaggcgcgcaaggcgaagaaggaaatggtggag
gccaacctgcgcctcgtgatctccatcgccaagaagtacaccaaccgcggcctgcagttc
ctcgacctcatccaggaaggcaacatcggcctgatgaaggcggtggacaagttcgaatat
cgccgcggctacaagttctccacgtatgccacctggtggatccgccaggccatcacgcgt
tcgatcgccgaccaggcgcgcaccatccgcatcccggtgcacatgatcgagacgatcaac
aagctcaaccgcatttcccgccagatgctccagcagttcggccgcgaggccacgccggag
gagcttgcgaaggaaatggacatgccggaagacaagatccggaaggtcatgaagatcgcc
aaggaaccgatctcgatggagacgccgatcggcgacgacgaggattcgcacctcggcgat
ttcatcgaagacaccaacgtcgagtccccgatcgaatccaccaccaacatcaacctgtcg
gaaaccgtgcgcgacgtcctcgccggcctgaccccgcgggaagccaaggtgctgcgcatg
cgcttcggcatcgacatgaataccgaccacaccctcgaggaagtcggcaagcagttcgac
gtcacccgcgagcgcatccgccagatcgaagccaaggccctgcgcaagctgcgccacccg
agccgttcggagcagctgcggagcttcctcgacatcgattga
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