Lysobacter helvus: LYSHEL_12950
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Entry
LYSHEL_12950 CDS
T07483
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
lhx
Lysobacter helvus
Pathway
lhx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LYSHEL_12950 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhx03400
]
LYSHEL_12950 (recB)
Enzymes [BR:
lhx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LYSHEL_12950 (recB)
DNA repair and recombination proteins [BR:
lhx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LYSHEL_12950 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BCT95424
LinkDB
All DBs
Position
1341771..1345313
Genome browser
AA seq
1180 aa
AA seq
DB search
MSATILDTPLDARSFIEASAGTGKTYALAGLFARAVIVQRLEVPQILAVTYTVAATQELH
ERVRLRLQRAAQLADAWQSDDAPHREGDDAESALLRGLLHAALHDGTRESLSTLRLRLRR
AVRDLDLASITTIHGFCQRLLSEHALLAGQPLLPTAIEPDNAAQRSRLAVVLWRAHARTA
EGAAFLQRMFTDVDSLANDLRDLLSSEPLLPPPPAGDPQTARTQAWLALRRAFTHHGEAD
RALLDAAATQGLLSKAKDKRLPIETLWHWFSVQSDAPPQSHEDLPKLTREGLGKACVPSK
AHLAPTLALSAHVERFLETEQGFDLMHLHALRADARREDQAMKREANVRGFDDLVDAVFE
ATEDDVVFHALAEALRAQYPLVLVDEFQDTDARQWAIFSRLFGEGGLLLVGDPKQAIYRF
RGGDVQTYLDARGTAQLAAPLDRNFRSRPCVLAAVNRVFAHASVDAEPLGEGIAFAPTQP
GDRACDPDFCIDGTPAPALIVQTHVATTGAKWSAGESIERAARSCALAIRDLLLLAREGR
ATRRDANVQRPVEPRDCAVLVRSHKEGIAIRDALTHLGVPAVSAGRGSLYETDEAQQLLA
LLLALAAPGDDRRLRAVLAMPLFGYDAGMLQALEDDGEAQRRWQQDLADWRLRWESHGPQ
PMLADVVAREAARLLAFADGERRITHLLQLGEQLQEARAQRLGPQGQVDWLRAAIAHADR
EDETQWPNLESDASRVQILTLHKSKGLEFPLVFLPFAAIGRSRNDRARVMQYHDATGRRV
RQWKTQQPQPGAPAWDKAKDAARREDAAEDMRLLYVGLTRARDALWLCTGPFASNAQSSL
HRLFGGVLPHADVQRDLGGSLDLRAPRDEADDDARLPPATPGDIPPPRVPERRLRRDWWI
HSFSQLHRQHAHGAQALAEESPADDERPLVVVDAIDPALLRFSGTRFGNALHHALEHVDF
AAWRDAQDAPADQVDILRDALRSQDYPDTDLDAGVRELAPLVARTLNAPLPEGVRLCDVP
DADRIAELEFHFTLADADAHAFLALLQAHGIARGRRDFGAWPRLSGLMTGKIDLTYRVDG
RLYVVDYKSNRLPAYDTQALADAMGASEYDLQALLYVVAVHRWMRLRRGAGYSMATHFGG
VRYLFCRGLDATDAVPGLAVPEFPAALVEAVDALLIGGHA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccaccatcctcgacaccccgctggatgcgcgcagcttcatcgaagccagcgcc
ggcacgggcaagacgtatgcgctggcgggcttgttcgcgcgcgccgtgatcgtgcagcgc
ctcgaggtcccgcagatcctcgccgtcacctacaccgtggccgcgacgcaggagctgcac
gaacgcgtccgcctgcgcctgcaacgcgccgcgcaactcgccgacgcctggcagtcggac
gacgcgccgcaccgcgaaggcgacgacgccgaaagtgccctcctccgcggcttgctgcat
gccgcgctgcacgacggcacccgcgaatccctgtcgacattgcgcctgcgcctgcgtcgc
gccgtgcgcgacctcgacctggcctcgatcaccaccatccacggcttctgccagcgcctg
ttgtcggaacacgccttgctcgccggccagccgctgctgcccaccgccatcgagcccgac
aacgccgcgcagcgcagccgcctggcggtcgtgctgtggcgcgcgcacgcgcgcaccgcg
gaaggcgcggcgttcctgcaacgcatgttcaccgacgtcgacagcctggcgaacgacctg
cgtgacctgttgtcttcggaacccttgctgccgccgccgcccgccggcgatccgcagacc
gcgcgcacgcaggcgtggctcgcgttgcgtcgtgcgttcacgcaccacggggaggcggat
cgcgcgttgctcgatgcggccgccacgcaggggctgttgagcaaggcgaaggacaagcgc
ctgccgatcgagacgctgtggcactggttctcggtgcagtccgatgcgccgccgcaatcg
cacgaagacttgccgaagctcacgcgcgaaggcctgggaaaggcctgcgttccgagcaag
gcgcacctcgcaccgaccctcgccctgtcggcgcacgtcgaacgcttcctcgaaaccgaa
caaggcttcgacctcatgcacctgcacgcgttgcgcgccgacgcgcgccgcgaagaccag
gcgatgaagcgcgaagccaacgtgcgcggcttcgacgacctcgtcgacgccgtgttcgaa
gcgacggaagacgacgtggtcttccacgcgctcgccgaagccctgcgcgcgcaatatccc
ttggtgctcgtcgacgaattccaggacaccgatgcgcggcagtgggcgatcttctcgcgc
ttgttcggcgaaggcggcctgttgctggtcggcgatcccaagcaggcgatctaccgtttc
cgcggcggcgacgtgcagacgtacctcgacgcgcgcggcaccgcgcaacttgccgcgccg
ctcgaccgcaacttccgttcgcgcccgtgcgtgctcgccgcggtgaaccgcgtgttcgcg
cacgccagcgtcgacgccgaaccgctcggcgaaggcatcgcgttcgcgcccacgcaaccg
ggcgaccgcgcgtgcgatccggatttctgcatcgatggcacgccggcgccggccctgatc
gtgcagacgcacgtggccaccaccggcgcgaagtggtccgcgggcgaatcgatcgagcgc
gccgcgcgcagctgcgcccttgccatccgcgacctgctgctgcttgcgcgcgaaggccgc
gcgacccgccgcgacgcgaacgtgcagcgccccgtcgagccgcgcgactgtgccgtgctg
gtgcgcagccacaaggaaggcatcgcgatccgcgacgcgctcacgcacctcggcgtgccc
gcggtcagcgccggccgcggcagcctgtacgaaaccgacgaagcgcagcagttgcttgcc
ttgctgctcgcgctggccgcgccgggcgacgatcgccgcctgcgggccgtgctcgcgatg
ccgttgttcggatacgacgcgggcatgttgcaggcgctcgaggacgacggcgaagcgcag
cgccgctggcaacaggacctcgccgactggcgcctgcgctgggaatcgcacggcccgcaa
ccgatgctcgccgatgtcgtcgcacgcgaagccgcgcgcctgctcgcgttcgccgacggc
gagcgccgcatcacgcacctgctgcaactcggcgagcaattgcaggaagcgcgcgcgcaa
cgccttggtccgcaaggccaggtggactggttgcgtgccgccatcgcgcacgccgaccgc
gaagacgaaacgcagtggcccaacctggaatccgatgcgagccgcgtgcagatcctcacg
ctgcacaagagcaagggcctggaattcccgctcgtgttcctgccgttcgcggcgatcggg
cgctcccgcaacgaccgcgcgcgcgtcatgcagtatcacgacgccaccggccgccgcgtg
cgccaatggaagacgcagcagccgcaaccgggtgcgccggcgtgggacaaggcgaaggac
gcggcccggcgcgaggatgccgccgaagacatgcgcctgctgtacgtcggcctcacgcgc
gcgcgcgatgcgctgtggctgtgcacggggccgttcgcgtcgaacgcgcaatcctcgttg
catcgcctgttcggcggcgtgttgccgcacgcggacgtgcagcgcgacctcggcggcagc
ctcgacctgcgtgcgccgcgcgacgaggcggacgacgacgcccgcctcccgcccgcgaca
cccggcgacatcccgccgccgcgcgtgcccgaacgccgcctgcgccgcgactggtggatc
cacagcttcagccagctgcatcgccagcatgcgcacggtgcgcaggcgttggccgaagag
tcgcccgccgacgacgagcgcccgctcgtggtggtcgacgcgatcgatccggcgttgctg
cgtttttccggcacgcgcttcggcaacgcgctgcaccatgcgctcgaacacgtcgacttc
gccgcgtggcgcgacgcgcaggacgcacccgccgaccaggtcgacatcctgcgcgacgcg
ttgcgctcgcaggactatcccgacaccgacctcgacgcgggcgtacgcgaactcgcgccc
ctcgtcgcgcgcaccctgaacgccccgctccccgaaggcgtgcgcctgtgcgacgtcccc
gacgccgaccgcatcgccgaactggaattccacttcaccctcgccgacgccgatgcgcat
gccttcctggcgttgctgcaggcgcacgggattgcgcgcggtcgccgcgacttcggcgcg
tggccgcgcttgtccggcctgatgacgggcaagatcgatctcacgtatcgcgtcgacggg
cgcctgtacgtcgtcgactacaagtccaatcgcttgcctgcgtacgacacgcaggcgctg
gccgacgccatgggcgccagcgagtacgacctgcaggccttgctgtacgtggtcgccgtg
catcgctggatgcgcttgcgacggggcgccgggtattcgatggcgacgcatttcggcggc
gtgcgctatctgttctgccgcgggctggatgcgacggacgccgtccccggcctcgccgtc
ccggaattccccgccgcgctcgtcgaagccgtcgacgcgttgctgatcggaggccacgca
tga
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