Lysobacter helvus: LYSHEL_21190
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Entry
LYSHEL_21190 CDS
T07483
Symbol
dnaE1
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lhx
Lysobacter helvus
Pathway
lhx03030
DNA replication
lhx03430
Mismatch repair
lhx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LYSHEL_21190 (dnaE1)
03430 Mismatch repair
LYSHEL_21190 (dnaE1)
03440 Homologous recombination
LYSHEL_21190 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhx03032
]
LYSHEL_21190 (dnaE1)
03400 DNA repair and recombination proteins [BR:
lhx03400
]
LYSHEL_21190 (dnaE1)
Enzymes [BR:
lhx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LYSHEL_21190 (dnaE1)
DNA replication proteins [BR:
lhx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LYSHEL_21190 (dnaE1)
DNA repair and recombination proteins [BR:
lhx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LYSHEL_21190 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BCT96248
LinkDB
All DBs
Position
complement(2211444..2214971)
Genome browser
AA seq
1175 aa
AA seq
DB search
MPAFAHLHLHSEYSLVDSTIRIPELVARCVALGQPAVAVTDQNNLFALVKFYKAAEGAGV
KPIAGADILLADGDEAPTRLTLLCRDRAGYLSLSRLLTRAWMEGHRNDGVVVRPAWLRDE
NEGLFALAGRHSEAGRLAAAGKHELAEQWLADWQRHTGERMYLELSRTAREGEDTFNAFA
LHAATRRGLPVIATNDARFLDADGFEAHEARVCIATGRVLDDPKRPKDYSTEQFVKSSEA
MSELFADVPDAIDNAIALATRCNLELRLGTYYLPAFPVPDDETLDSWMRVQAREGLVKRL
EKAPIAAGHTRETYFERLEIELDVIIKMGFPGYFLIVADFINWAKDHDIPVGPGRGSGAG
SLVAWALGITDLDPLPYDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVAAKYGRDRV
SQIITYGTMAAKAVVRDTGRVLGHPYGFVDGIAKLIPLTLGVSLDDALGESDAARKNPEL
ASAELMQRNAAEDDVRDLLSLARDLEDLTRNAGKHAGGVVIAPSPLSDFCPLFAEHDADG
RGRNPVTQFDKDDVESIGLVKFDFLGLRTLTIIDWAVKAINVRRAAEGGEPLDIIALPLD
DKPTYDLFARGDSVAVFQFESRGMRELLKRAKPDTFEDIIALAALFRPGPLGSGMDRDWV
DRKHGNAAVTYPHPLLEPVLAPTYGVIVYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKP
EEMAKERVKFETGASAQGVDARVASSIFDLMEKFAEYGFNKSHSAAYALVAYQTAWLKVH
YPAEFMAAVLSSDMDNTDKVVGFLDEARALKLEVLPPDVNASVYMFEAKDPKTIRYGLGA
VKGVGRGACEAIAEERARGGTFADLLDFCKRVDSTKLNRRALEAMVNAGALDALGRNRAS
LMAQLPEVLKATEQLAREREAGQVSLFGAMPEAPALHLTLADLDEWPLQQKLQGERETLG
HYLSGHPLDPYRDELRGLVGHDLSDLDRMWSERPDSERKGWRPEMQVVLAGQVVGMRKRG
DSQAFVQLEDGRGRIECAFFAEAYYSFAQLLTRDRILIVEGGLREDEFSGGFSLRAKRCW
DFGQVCAQYAQRLSVKLDLRQKDALAQFERALLPYSPGATPMLLEAITSTAVGRLNINGG
QGIRADAALPGVLRALPAVRTVRLALAKPWIGGNA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctttcgcccacctgcacctgcacagcgagtactcgctggtcgactcgaccatc
cggatcccggagctggtcgcgcggtgcgtggcgctgggccagcccgcggtcgcggtgacc
gaccagaacaacctgttcgcgctggtgaagttctacaaggcagccgaaggcgcgggcgtc
aagccgatcgccggtgccgacatcctgctcgccgatggcgacgaagcgcccacgcgcctc
accctgctgtgccgcgatcgtgccggttacctcagcctgtcgcgcctgctgacgcgcgcg
tggatggaaggccatcgcaacgatggcgtcgtcgtgcgccccgcgtggctgcgcgacgaa
aacgaaggcctgtttgcgctcgcggggcgccacagcgaagcgggccgcctcgccgccgcg
ggcaagcacgagctcgccgaacaatggctcgccgactggcaacgccacaccggcgagcgc
atgtacctggagctctcgcgcaccgcgcgcgaaggcgaagacacgttcaatgcatttgcg
ttgcacgccgcgacgcgccgcgggctgccggtcatcgcgaccaacgacgcacgcttcctc
gacgccgatggcttcgaagcgcacgaagcgcgcgtgtgcatcgcgacgggccgcgtgctc
gacgatccgaaacgcccgaaggactacagcaccgaacagttcgtcaaatcgtccgaggcg
atgtcggaattgttcgccgacgtgcccgacgcgatcgacaacgcgatcgcgctcgccacg
cgctgcaacctggaattgcgcctcggcacgtactacctgcccgcgttcccggtgcccgac
gacgaaacgctggacagctggatgcgcgtgcaggcgcgcgaaggcctggtcaagcgcctg
gagaaggcgccgatcgccgcgggccacacgcgcgaaacctatttcgagcgcctggagatc
gagctcgacgtcatcatcaagatgggcttccccggctacttcctgatcgtggccgacttc
atcaactgggcgaaggaccacgacatccccgtcggtccgggccgcggttcgggtgcgggt
tcgctggtggcctgggcgctgggcatcaccgacctggacccgctgccgtacgacttgctg
ttcgagcgcttcctcaatcccgaacgcgtgtcgatgcccgacttcgacatcgacttctgc
atggaccgccgcgacgaagtcatcgactacgtcgccgcgaagtacggccgcgaccgcgtc
agccagatcatcacctacggcacgatggccgcgaaggccgtggtgcgcgacaccggccgc
gtgctcgggcatccgtacggcttcgtcgacggcatcgcgaaactgatcccgctcacgctg
ggcgtgagcctggacgatgcgctgggcgaatccgacgccgcgcgcaagaaccccgagctc
gcctccgcggagctgatgcagcgcaacgcggccgaggacgacgtccgcgacctgctgtcg
ctggcgcgcgacctggaagacctgacgcgcaacgccggcaagcacgccggcggcgtggtg
atcgcgccgagtccgctgtccgacttctgcccgctgttcgccgaacacgacgccgacggc
cgcggccgcaacccggtgacgcagttcgacaaggacgacgtcgaatccatcggcctggtg
aagttcgacttcctcggcctgcgcacgctcacgatcatcgactgggcggtgaaggcgatc
aacgtgcgccgcgccgccgaaggcggcgaaccgctcgacatcatcgcgctgccgctggac
gacaagcccacctacgacctgttcgcgcgcggcgacagcgtcgcggtgttccagttcgaa
tcgcgcggcatgcgcgagctgctcaagcgcgccaagcccgatacgttcgaagacatcatc
gcgctcgccgcgttgttccgtcccggcccgctgggctcggggatggaccgcgactgggtg
gaccgcaagcacggcaacgcggccgtgacgtatccgcatccgttgctggaacccgtgctc
gcgccgacctacggcgtgatcgtgtaccaggaacaggtgatgcagatcgcgcaggtgctg
gcgggctattcgctcggcggcgccgacctgctgcgccgcgcgatgggcaagaagaagccc
gaggagatggccaaggaacgcgtcaagttcgagaccggcgcttccgcgcagggcgtcgac
gcgcgcgtggcctcgtcgatcttcgacttgatggaaaagttcgccgagtacggcttcaac
aagtcgcactcggcggcgtacgcgctggtcgcctaccagaccgcgtggctgaaggtgcac
taccccgccgagttcatggcggcggtgttgtcgtcggacatggacaacacggacaaggtg
gtcggtttcctcgacgaagcgcgtgcgctgaaactcgaggtgttgccgccggacgtcaac
gcgtcggtgtacatgttcgaagcgaaggatcccaagacgatccgctacggcctcggcgcg
gtgaagggcgtcggccgcggtgcgtgcgaagcgatcgccgaagaacgcgcgcgcggcggc
acgttcgcggacctgctggatttctgcaagcgcgtggattccaccaagctcaaccggcgt
gcgctggaagcgatggtcaatgccggtgcgcttgatgcgctcgggcgcaatcgcgcgtcg
ctgatggcgcagttgccggaagtgctgaaggccaccgagcagttggcgcgcgaacgcgag
gccggccaggtgtcgctgttcggcgcgatgccggaagcgcccgcgctgcacctcacgctg
gcggacctcgacgagtggccgctgcagcagaagctgcagggcgaacgcgaaacgctcggc
cattacctcagcggccatccgctggatccgtatcgcgacgagttgcgcgggctggtgggc
cacgacctcagcgacctcgatcgcatgtggagcgagcgccccgacagcgaacgcaagggg
tggcgcccggaaatgcaggtggtgctcgccgggcaagtggtcggcatgcgcaagcgcggc
gacagccaggccttcgtgcagctggaggacgggcgcgggcgcatcgagtgcgcgttcttc
gccgaggcgtactacagcttcgcgcagttgctgacgcgcgatcgcatcctcatcgtcgaa
ggcgggttgcgcgaagacgagttcagcggcgggttttcgctgcgggcgaagcgctgctgg
gatttcgggcaggtgtgcgcgcagtacgcacaacgcctgtcggtgaagctggacctgcgg
cagaaggatgcgttggcgcagttcgaacgcgcgttgctgccctactcgccgggcgccacg
ccgatgttgctggaagccatcacgtcgacggccgtgggccggttgaacatcaacggcggc
cagggcatccgcgccgatgcggccttgccgggcgtgttgcgcgcgttgccggccgtgcgc
accgtgcggctggcgctggcgaagccgtggatcggtggcaacgcgtaa
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