Leptospira interrogans serovar Copenhageni: LIC_10035
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Entry
LIC_10035 CDS
T00166
Symbol
rnR
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lic
Leptospira interrogans serovar Copenhageni
Pathway
lic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIC_10035 (rnR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lic03019
]
LIC_10035 (rnR)
03016 Transfer RNA biogenesis [BR:
lic03016
]
LIC_10035 (rnR)
Enzymes [BR:
lic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LIC_10035 (rnR)
Messenger RNA biogenesis [BR:
lic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LIC_10035 (rnR)
Transfer RNA biogenesis [BR:
lic03016
]
Prokaryotic type
tRNA degradation factors
LIC_10035 (rnR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
AAS68672
UniProt:
Q72WA2
LinkDB
All DBs
Position
I:41921..44176
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AA seq
751 aa
AA seq
DB search
MNIKKKQTTENKSVKSNRKKKTFDKSNKTKKERTDGFRENEIGKKILKYIQSRAGSVIQF
KDLNAKILREENQNSYGKKREKWEFQEKEREILETLKILETEGLIELEKKNIIINSNQKL
QGTISISKKGDGFVKLSSGVEIFVPNQYTQSAIQGDLVEVRPYGVGKKRRLEGEVTEILR
RGRDLYRMIVTEKEPKFIFGKLLDIDGEEKEGYLLRKTILTDLQEEIQSGDVLIVKLKEE
TEHEKNLYEVQFLRFESDTKEDLDLMRMLMKYNYNILYPENIILDLPEEVNESTVDDWNE
RVDLRNLKCITIDGEYSKDFDDAISFIEEKNRIRFYVHIADVSYYVRPGNDLDEEAYNRA
TSVYLGSRVVPMLPPELSESLCSLIAGKNRLAFTVEMEADWKGKITHAKYYKSIINVKER
YTYNKAESEILSGDSDNWIFRMNEFAKILRTKRIEDGRVDLNLKENKVVTDSEHNVIEIA
IQDRLQSHILIEEFMLSANIKVAEYIRKKKHPTLYRVHEAMNEEKIESLNAFLQLNATKI
LLKDSSYESIRSVLKELEAKPAERLFNMFLLRTFMQAYYSGEHLGHWGLGFEDYCHFTSP
IRRYPDLVCHRVLQNILLGKKPIYTPEEIVTFGLHCSHQERKASDAERDYYKLKACRYLE
KTGIKEFSATITGCRPHLIFVDLENPAVDACLFSSEFTDEGEIRLETDFSFYSKKYSKIY
TLGDKIEVELDRIDYEEIKIFVKMKKFQKKV
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaagaaaaaacaaacaacagaaaataaatctgtaaaatctaacagaaaaaag
aaaacgtttgataaatccaataaaactaaaaaagaaagaaccgacggttttcgtgagaat
gaaataggaaaaaaaatcttaaagtatattcaatccagagcgggttctgtaattcaattt
aaagatttgaacgcgaaaattctaagagaagaaaatcaaaactcttacggtaaaaaaaga
gaaaaatgggagtttcaagaaaaagaaagggagatattggaaacattaaaaattcttgaa
acagaaggattaatcgaattagaaaaaaagaatattattatcaattcaaaccagaaactt
caaggaacaatttctattagtaaaaaaggagacggttttgtaaaactttcttcgggagtc
gagattttcgttccaaatcaatatacacaatctgccattcaaggtgatttagtagaagtt
cgtccttacggagttggtaaaaagagaaggttagaaggagaagtcacggagattctcaga
agagggcgcgatctttatagaatgatcgtcaccgaaaaagagcctaagtttattttcgga
aaacttttggatatagacggagaggaaaaggaaggttatcttcttcgtaaaacaattctt
acggatcttcaagaggaaattcaatccggagacgttttgatagttaaattaaaagaagaa
acggaacacgaaaagaatctttatgaggtccagtttttacgttttgagtcagataccaaa
gaagatttggatctgatgagaatgttgatgaaatacaattataatattctttatcctgaa
aatataatattagatcttcctgaagaagtaaacgaaagcactgtggacgattggaatgaa
cgtgtagatcttaggaatctgaaatgtattacaatagacggagagtattccaaagatttt
gacgacgcgattagttttatagaggaaaaaaatcgaattcgattttacgtacatatcgcg
gatgtttcttattatgtaagaccgggaaacgatttagacgaagaagcatataatcgtgct
acttctgtatatttaggaagtcgggttgttcctatgttacctcccgagttatccgaaagt
ctttgttccttgattgccggaaaaaatcgtttggcttttaccgtggaaatggaagctgat
tggaaaggaaaaattactcacgcaaaatattataaaagcataataaatgtaaaagaaaga
tatacttataacaaagccgagtccgaaatcttatctggggattctgataattggatcttt
agaatgaatgaatttgccaaaattcttcgaacaaaaagaatcgaagatggaagagtggat
ttaaatttgaaagaaaataaagtggtcactgattccgaacacaacgtgattgaaatagcg
attcaagataggctccaatcgcatattctcatagaagaatttatgctttctgcaaatatt
aaagttgctgaatatattcgtaagaaaaaacacccgactttatatagagttcatgaagcc
atgaatgaagaaaaaatagaatccttaaacgcatttcttcaattaaatgccactaaaatt
ttactcaaagattctagttacgaatctattcgttcggttctaaaagaattagaagcaaaa
cctgcagaaagattgtttaatatgtttttattgagaacatttatgcaagcttattattct
ggagaacatttaggacattggggtttgggatttgaagactactgtcattttacgtctccg
attcgaagatatcctgatctggtttgccatagggttttacaaaatattcttttaggtaaa
aagcctatttatactccggaagaaatagtgactttcggtttgcattgttcacatcaggaa
cgcaaagcaagtgatgcagaaagggattattataaacttaaggcatgtcgctatttggaa
aaaactggaattaaagaattttcagcaacgatcactggttgtagaccacatttaattttt
gtagatctggaaaatcctgctgtagatgcttgtttattttcttctgagtttacggatgaa
ggtgaaattcgtttagagacggacttttcattttactctaaaaagtattctaaaatttat
actcttggagataaaattgaagtagaactggatcgaatcgactacgaagaaattaaaatc
tttgtaaaaatgaaaaaattccaaaagaaagtatag
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