Leptospira interrogans serovar Copenhageni: LIC_12636
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Entry
LIC_12636 CDS
T00166
Symbol
rho
Name
(GenBank) Rho
KO
K03628
transcription termination factor Rho
Organism
lic
Leptospira interrogans serovar Copenhageni
Pathway
lic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIC_12636 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lic03021
]
LIC_12636 (rho)
03019 Messenger RNA biogenesis [BR:
lic03019
]
LIC_12636 (rho)
Transcription machinery [BR:
lic03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LIC_12636 (rho)
Messenger RNA biogenesis [BR:
lic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LIC_12636 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
NACHT
AAA
AAA_25
OB_RNB
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AAS71196
UniProt:
Q72P40
LinkDB
All DBs
Position
I:3195007..3196455
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AA seq
482 aa
AA seq
DB search
MATARRDNKNRHQHSNHNHNNQNDSGDSFEEESTNQESQEFDSSENSDPRSRKRKRGGYE
GPAPAPIDLVELKKKAISDLIEVAKSLGVENTGGLKKQNLIFAILQAQAERDGQVHAAGV
MEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKESERFFAML
RVETVNSYTPDVAGKRALFDNLTPLYPNERLKMEYDPSMLDTRILDLMCPIGKGQRALIV
APPRTGKTILMQNIANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQ
RHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSGGVDSNALHKP
KRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDRKLSDKRIFPA
IDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSITESMELLLEKMRLSKTNDAFLASMN
TQ
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagcaagacgagacaataaaaacagacaccaacattccaaccacaatcataac
aaccaaaacgattctggagattctttcgaagaagaaagtacaaaccaagaatctcaagaa
tttgattcttccgaaaattcagatcccagatctcgtaaacgcaaacgagggggttacgaa
ggccccgcccctgctcctatcgatctagtagaactgaagaaaaaagcaatttctgatttg
atcgaagtcgccaaaagtttaggagtagaaaataccggcggtttaaaaaagcagaatttg
atctttgccattttacaagcgcaagcggaaagagacggacaagtccacgccgccggggtt
atggaaaaacttccggacggatatggatttttacgttctccggattacaactacgtgccg
ggtccggatgacatttatgtttctccttctcagatcaaattgttcggtcttagaaccggg
gatacggtagaaggtcaaattcgtcctcccaaagaatcggaacgattttttgccatgctc
cgagtggaaaccgtcaacagttatactccggacgtagccggtaaacgcgccttatttgac
aacttaacacctctttatccaaacgaaagactcaagatggaatacgatccatcgatgctc
gacactagaatcttagatttaatgtgtccaattggaaaaggacaaagggctttgatcgta
gcacctcccagaaccggtaaaacgattttgatgcagaatatcgcaaacgcgattacatcc
aatcatccggaatgttctttaattgtacttctgatcgacgaacgtcccgaagaagtgaca
gacatggcccgtcacgttcggggagaagtagtttcttccacatttgacgaacctgcacaa
agacacgttcaagtcgccgagatggtcatcgaaaaagcaaaacgtctcgtcgaacatgga
aaagacgtggttatacttttagattcgatcactcgtttggctcgggcctacaatcaagtc
attccaacttccggtaaaattctttccggtggagtggactccaatgcacttcataaacca
aaacgattttttggagccgcaagaaacattgaagaaggtggttctctcacgatcatcgcc
actgctttgatagatactggatccaagatggacgaagtaatctttgaagaattcaaagga
actggaaatatggagatccatctggatcggaaactttctgataaacggatcttccctgca
atcgatattaataaatccggaactcgtaaagaagaactactaattaccaaagacgtcctt
cagaaagtgtttgttctgcgaaaagtactttctcctatgagtatcacggaaagcatggaa
ttattgctggaaaaaatgaggctttctaaaacaaacgacgcctttttagccagtatgaac
acacagtaa
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