Leptospira interrogans serovar Copenhageni: LIC_13230
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Entry
LIC_13230 CDS
T00166
Symbol
dead
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lic
Leptospira interrogans serovar Copenhageni
Pathway
lic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIC_13230 (dead)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lic03019
]
LIC_13230 (dead)
03009 Ribosome biogenesis [BR:
lic03009
]
LIC_13230 (dead)
Enzymes [BR:
lic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LIC_13230 (dead)
Messenger RNA biogenesis [BR:
lic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LIC_13230 (dead)
Ribosome biogenesis [BR:
lic03009
]
Prokaryotic type
rRNA helicases
LIC_13230 (dead)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
Glyco_hydro_2_C
MtrA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAS71775
UniProt:
Q72MF7
LinkDB
All DBs
Position
I:3965016..3966581
Genome browser
AA seq
521 aa
AA seq
DB search
MKGTSMKKLKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKT
AAFAIPTIELLEVESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIER
QLRALRKNPQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDT
PADRQTIMFSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALA
RLIEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIE
ILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNL
KKIERINGIKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEKLMGDDYTA
LDIAAALFKMTILKDSVTFDDSVQFESDFKYEEKHSTKKKSGGGRYRDRNFGRSGSGSRS
KSNSNSHFGNNSKDGSRSKFSKGDKNQKQGGGATSFKKKKK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggaacatctatgaaaaaactcaagtttagtgaactaaacttatccgccgagatc
caaaacgcaattttagaaatgggttttgaagaagcttcaccgatccagtcagaagcaatt
ccggttatattaaaaggaaaagatattatcggacacgctcaaaccggcactggtaaaacc
gcagcgtttgcaattcctacaattgaactcctcgaagtagaaagtaaacatttacaagcc
ttaattctttgtccgactcgagaattggtgatacaagttagcgaacaatttcgcaagcta
ataaaatacaaaggcaactttgaagttgttccaatttacggcggccaagagattgaaaga
caacttagagcccttcgcaaaaaccctcagatcgtaattgcgactccaggtagaatgatg
gaccacatgagaagaggttctatccacctcgacgaaatcaaaatcgtagttttagacgaa
gcagatgaaatgttagacatgggttttcgggaagatatggaattcatcttaaaggataca
cctgcagatcgtcagacaattatgttttccgctacgatgacggacgatgtacttactttg
atgaaaaaatttcaaaatcatccccaaattatagatgttactcatcagaaattgagtgct
cctaaaattgaacagatctactacgaaattcaagaaaacgcaaaaggagaagcccttgcg
agattgatcgaatacagaaatgtaaaactagcattagtattttgtaatacaaaagcgcaa
gtagatacggttgtagaacttttgaaatccagaggttactttgcagaagcactccacgga
gacttgaatcaaaaacaaagagataaagtgatgagcggttttagaaaaggaagcatcgag
attttagttgcaactgacgtggccggaagggggatcgatgtcaataacgtcgaagccgtt
tttaactatgatcttccaagagacggagaggactacgttcatagaattggtagaaccgga
agagccggtaaaaaaggaatcgcattttcttttatcgtaggaaaacaaatctacaacttg
aaaaaaatagaacgtatcaacggaatcaaaatcgaagccggtaagattccaacgttagac
gatttagaagaaacaaaaattcattcttacacttctaaagtaagatccatcgtagacgcc
ggtcatattggcaaatacgtaaaccaagtagaaaaactgatgggagacgattacacggct
ctcgacatcgccgccgccttatttaaaatgacaattttaaaagacagcgttacctttgac
gattccgttcaatttgaatctgattttaaatacgaagaaaaacattctactaaaaagaaa
tctggtggtggaagatacagagaccggaatttcggtagatccggttctgggtctagatcc
aaatcaaattcgaattctcatttcggcaataactccaaggacggttctcgttctaaattc
tccaagggagataaaaatcaaaaacagggtggtggggctacttctttcaaaaaaaagaaa
aagtaa
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