Lactobacillus iners: GYK47_01595
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Entry
GYK47_01595 CDS
T08045
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
lid
Lactobacillus iners
Pathway
lid02020
Two-component system
lid02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lid00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GYK47_01595 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GYK47_01595 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lid03021
]
GYK47_01595 (rpoN)
Transcription machinery [BR:
lid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GYK47_01595 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_6
HTH_Tnp_ISL3
HTH_24
HTH_38
Motif
Other DBs
NCBI-ProteinID:
QIC18305
LinkDB
All DBs
Position
359293..360573
Genome browser
AA seq
426 aa
AA seq
DB search
MKYKNGLSLRLKESLITRLFLSPKLKQDLDILSYNTEDLLKVLHDIAETNPFIDLKYTNA
NTTTLDWVQDPSQDSLVEYLIKQIQLSAWSNNDKKLVTFLIYKLDNNGYLRFTCKQLANE
IEYSEADIQNAKNLLHELSPLGVGAYDLNECLLIQAKKLLHFNPIALAILEKHLLERLAD
TSSWNSLPWKKEKILEALKELRKLEPTPGAKFDNFTNIQYLIPDLIFEIDNGHVLVKDSK
FNLPEVVFNEVEYTNLKGSCATNEVEYFNAQKKQFMDLQLSLERRQKTLIRLGEYLAKYQ
LAYLKTMDKKQLKALNMNNVAQSLGLSVSTISRAVKDKYFECNNRIISLKIMFMKSFKNN
ITAMKVTDTIERLINEEDKSHPLSDQDICDQLLLQGINISRRAVTKYRTKMNIQNSYWRK
LNDCNK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgaaatataaaaatggattatccttgcgattgaaagaatcgctaattaccagattgttt
ttatcccccaagttaaagcaggatctggatatattatcttataatactgaagatttatta
aaagtgttacatgatatagcagaaaccaatccatttattgatttaaaatatactaatgca
aatacaactactttagattgggtgcaagatccgtctcaagatagtttagtagaatattta
attaagcaaattcagctttcagcttggtcgaataatgataaaaaattagttacctttttg
atttataagctggataataatggttatttacgttttacatgtaagcaattagcaaatgag
atagagtatagtgaagccgatattcaaaatgctaagaatttattacatgaactgagtcca
ttaggcgtaggagcttatgatttaaatgaatgcttattgattcaggctaaaaaattattg
cattttaatccaattgcattagctattttagaaaaacatctattagaacgtcttgcagat
accagtagctggaattcattgccttggaaaaaagaaaaaattttagaagcattaaaagag
ctacgaaaattagagcccacgcctggtgctaaatttgataatttcactaatattcaatac
cttattccagatttgatttttgaaatagataatggtcatgttttagttaaagattctaag
tttaatttaccagaggttgtttttaatgaagtagaatataccaacttaaaaggatcttgt
gctacaaatgaggtagagtattttaatgcacagaaaaagcaatttatggatttacaatta
tctttagagagacgacaaaaaactttaattagattaggtgaatatttagctaaatatcaa
cttgcatatttaaaaactatggataagaaacaattgaaagctttaaatatgaacaatgtt
gctcaatctttaggactttcagttagcacgattagtcgagcagttaaagataaatatttt
gaatgtaataataggattatcagtctcaaaattatgtttatgaagtcgtttaaaaataat
attactgccatgaaggtgacagataccattgaacgattaataaatgaagaagataaatca
catccattaagtgatcaagatatttgcgatcaactattattacaaggaatcaatattagt
agaagagcagttactaaatatcgaacgaaaatgaatattcaaaatagttattggcgtaag
ctaaatgattgtaataaatag
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