Lactobacillus iners: GYK47_03780
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Entry
GYK47_03780 CDS
T08045
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lid
Lactobacillus iners
Brite
KEGG Orthology (KO) [BR:
lid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lid03019
]
GYK47_03780
03009 Ribosome biogenesis [BR:
lid03009
]
GYK47_03780
Enzymes [BR:
lid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYK47_03780
Messenger RNA biogenesis [BR:
lid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYK47_03780
Ribosome biogenesis [BR:
lid03009
]
Prokaryotic type
rRNA helicases
GYK47_03780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
DsrH
Peptidase_M15_2
Motif
Other DBs
NCBI-ProteinID:
QIC18598
LinkDB
All DBs
Position
complement(780538..781926)
Genome browser
AA seq
462 aa
AA seq
DB search
MKMQMNNIFQTDQLKPNIKKGLEKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHA
YLIPIINDLDPELLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQ
LEKASNNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMTRL
GSNVTIGAFSATIPVKLEQFLNKYMQHPEFVVIDNPSVISPTVANDLIDVGSKDKKDILY
TLLTMGQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQ
YVIASDLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQI
AQLEKLGIHFEFKDLKNNELVERTHYHRRDNRRTRAQKLDNRLVGMVKKAKVKKKPGYKK
KIKVAIQADRQQKKKIEERIKARKQKRQRKRERDRLREDLEK
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgcaaatgaataatatttttcaaactgatcagttaaaaccaaatatcaaaaaa
ggcttggaaaaaattaattttttaaagccaacacctgtgcaacaacaggtattgccatta
ttgttggctcatcaaaatgttgtagtgcaggcggtgacagggtctggcaaaacgcatgca
tatttaattccaattattaatgacctagatcctgaacttttatgtactcaagcggtcatt
actgctcctagtcgagaattagctagtcaactttataaagttgctcgtcaattgagggat
gctgcagaattaaatatatcgattgaatatttaggcggaggtaatgatcgtactcgccaa
ttagaaaaagcatcaaataatgctcctcaattgattattgctacaccgggaagattgcat
gattttgctatcaaaaaaatcatcaaattagatcaggtaagtacttttattattgatgaa
gctgatatgactttagatatgggctttttaaatcaaatggatgacattatgacgcgatta
ggaagtaatgtaacaataggtgctttttctgcaacgattcctgttaaattagagcaattt
ttaaataaatatatgcagcatccagaattcgtagttatcgataatccaagtgttatttcc
ccaactgttgctaatgacttaattgatgtaggttccaaggataaaaaagatattctttat
acgcttttaactatgggacaaccttatcttgcttttgtttttgctaatactaaaaaaaca
gttgatgaattagcaacatatttagaccaaaaaggattgaaagtagccaaaattcatggt
gggataactgaacgtgaacgtaaaagaactatcaggcaggttagagaaggtcaatatcaa
tatgtgatcgctagtgatttggcagctcgtgggatagatataccaggaattagtctagtt
attaattatgaaataccgactgatttggagtttgtaattcatcgtattgggcgtacagga
cgtaataacctatatgggcatgcaattacacttatccatgaggaagaaatgcagcagata
gctcaattggaaaaattaggtattcattttgaatttaaggatctcaagaataatgaatta
gttgaaagaactcattatcatcgaagagataatcgccggactagagcacaaaaattagat
aatcgactagttggtatggttaaaaaagccaaagtcaagaaaaaaccaggttataagaaa
aaaataaaagtagcaattcaagctgatagacagcaaaagaaaaaaatcgaagaacgaatc
aaagccagaaagcaaaaacgtcagcgtaaacgagagcgggatagattacgtgaagacttg
gaaaagtaa
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