Lactobacillus iners: GYK47_06130
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Entry
GYK47_06130 CDS
T08045
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lid
Lactobacillus iners
Pathway
lid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GYK47_06130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lid03021
]
GYK47_06130
03400 DNA repair and recombination proteins [BR:
lid03400
]
GYK47_06130
Enzymes [BR:
lid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GYK47_06130
Transcription machinery [BR:
lid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GYK47_06130
DNA repair and recombination proteins [BR:
lid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GYK47_06130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Corazonin
DUF961
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
QIC18929
LinkDB
All DBs
Position
1245719..1246657
Genome browser
AA seq
312 aa
AA seq
DB search
MIEFEKPNITVIDQEESYGKFVVEPLERGFGTTLGNSLRRVLLTSISGTALSYIMIDGVL
HEFSTIPGVREDVTKIILNLKKLELKLLVDEEKMVEIDVEGPAVVTAADLKVDADVEILN
PDQYICTIAEGGHLHMSIAIKNGRGYIPASENKSDDMPIGVIPVDSLFSPIKKVNYQVEN
ARVGKRDDYDKLTLELWTDGSITPNDALSFAAKILEEHFKVFMSADMSDQFANVMIEKED
KSNEKKLEMTIEELDLSVRSYNCLKRAGINTVQELNNKSEADMMRVRNLGRKSLEEVKNK
LTELGLSFSKED
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgattgaatttgaaaaaccaaatataaccgttatagatcaagaagaatcatatggtaag
tttgttgtcgaacctttagaacgcggttttgggactactttaggtaactcactccgtcgt
gtcttattaacttcaatttcaggtacggcactttcttacattatgattgatggtgtttta
catgaattttcaacaattccaggcgtaagagaagatgtaaccaaaataattcttaattta
aagaaattggaattaaagctcttagttgatgaagaaaaaatggttgaaattgatgttgaa
ggaccagcagttgttacagctgcagatcttaaagtcgatgctgatgttgaaatattaaac
cctgatcagtatatttgtactattgctgaaggtggtcatttgcatatgagcatcgcaatt
aaaaatggtcgtggttatattccggcaagtgaaaataaatctgatgatatgcctattggt
gtaattccagttgattcgcttttttcacctattaaaaaagttaattatcaagttgaaaat
gcacgtgtgggtaagagagatgattatgacaaactcactttagaattgtggacggatggt
tcaatcacacctaatgatgcccttagttttgccgcaaagattcttgaagaacactttaaa
gtatttatgtctgcagatatgagtgatcaatttgctaatgttatgattgaaaaagaagac
aaatctaacgagaaaaagcttgagatgaccattgaagaattagatctttctgtaagatcc
tataattgtttaaagcgtgcgggaattaataccgttcaagaattgaataataaatctgaa
gcagatatgatgcgtgtacgtaacttaggacgtaaatcattagaagaagtaaagaataaa
cttaccgaacttggtctttcctttagtaaggaagattag
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integrated database retrieval system
