Lactobacillus iners: GYK47_06395
Help
Entry
GYK47_06395 CDS
T08045
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lid
Lactobacillus iners
Pathway
lid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYK47_06395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lid03019
]
GYK47_06395
03009 Ribosome biogenesis [BR:
lid03009
]
GYK47_06395
Enzymes [BR:
lid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYK47_06395
Messenger RNA biogenesis [BR:
lid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYK47_06395
Ribosome biogenesis [BR:
lid03009
]
Prokaryotic type
rRNA helicases
GYK47_06395
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
LidA_Long_CC
AAA_22
Cas3-like_C_2
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
QIC18974
LinkDB
All DBs
Position
1300781..1302244
Genome browser
AA seq
487 aa
AA seq
DB search
MKFSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPIL
QTLDKKQEGIQALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIRSLKQVP
NILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDIESILTFASNDHQTLLF
SATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFVRLKENEKFDILCRLIDVQDPE
LSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTIERLTRK
KMTPLRPPSDKEAFDGQLSIANKKIQELLDSDLTKYTKEAEKLLENNSALDLVAALLKDM
AKDAEQVKVEITPEKPLPFKNRRGNTQNFKRRYRSDDRDRNIKRHRKPNAQTRERNIKHN
FVIKKKD
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttcagaattaaatttaaagccagaattattgaaagcaattaagcgtgcgggg
tttgaagaggcaacgccgatccaggaaaaaacgattcctttggttctaagtggcaaggat
gtcataggacaagcccaaacaggaacaggtaagacagctgcttttggtttaccaatttta
caaactttagataaaaagcaggaaggtattcaagccttaattattgagcctacacgtgag
cttgctattcaaacacaagaagaattatttagattaggtagagatgaaaatgcacatgtg
caagtagtttatggtggtgcagatattcgacgtcaaattagatcattaaagcaggttcct
aatattttggtaggtactcctggtagattacttgatcatttaaagcgacgtacaattaat
ctttctcatttgaagcatgttattttagatgaagctgatgaaatgttagatatgggcttt
atccaagatattgaaagtattttgacttttgcttctaatgatcatcaaactttattattt
tcagctactatgcctaaaccaattttacaaattggtgaaaaatttatgcatgatccgcaa
attgtccagattaaatctaaagagttaactgcaaatttgattgatcaatattttgttcgt
ctaaaagaaaatgaaaaatttgatattttatgtagattgatagatgtccaagatccagaa
ttatcggttgtttttggtagaaccaaacgacgtgttgacgaactgactagaggatttcag
gcacgtggttatgatgctgcaggaatacatggtgatttaacccaaactaagcgaatgagt
gttttgaaacgctttaagcaaggtaaattggatatattggtagctactgatgtagcagct
cgtggtcttgatatctcaggggttagtcatgtttataattatgatattcctcaagatcct
gattcatacgttcatcgaattggaagaacgggtagagcaggtaagaatggtatgtcaatt
acttttgttactcctaatgaaattggctatatgaagacaattgaaagattaacacgtaag
aaaatgacacctctaagaccaccatctgataaagaagcttttgatggtcaattaagcatt
gcaaacaaaaaaattcaagaattattagatagtgatttaactaagtatactaaagaagct
gaaaaattattagaaaataattctgctctagatttagttgccgcattattaaaagatatg
gctaaggatgctgagcaagtaaaagtagaaataactccggaaaaaccgttgcctttcaaa
aatagaagaggaaacacacaaaactttaaacgaagatatcgttcagatgatcgtgatcga
aatattaagcgtcatcgcaaaccaaatgctcaaacaagagagcggaatattaaacataat
tttgtaattaagaaaaaagattaa
DBGET
integrated database retrieval system
