Leptospira interrogans serovar Lai IPAV: LIF_A2438
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Entry
LIF_A2438 CDS
T01983
Symbol
recJ
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lie
Leptospira interrogans serovar Lai IPAV
Pathway
lie03410
Base excision repair
lie03430
Mismatch repair
lie03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LIF_A2438 (recJ)
03430 Mismatch repair
LIF_A2438 (recJ)
03440 Homologous recombination
LIF_A2438 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lie03400
]
LIF_A2438 (recJ)
DNA repair and recombination proteins [BR:
lie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LIF_A2438 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LIF_A2438 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LIF_A2438 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AER03220
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All DBs
Position
1:2973747..2975678
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AA seq
643 aa
AA seq
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MIQPSPFSHGPGLKELHPAGLRPHFSPLQHRFYETHLREKSHPEHLLYHGLRELPSPFLL
PDLEPALDLLKEFIQKEKKILLFGDRDCDGVSSTSLLGSFLKKIHRGELILKTSNEEDYG
LCPAALDFVKRIKPDLLITLDFGTTNHIQIDELASIGIKVIVLDHHEIPERIPDCYLISP
KRSDSIYPNEKICTSVLALKFIQAYLYSSLEEYNRATWIGDGNSLFSGFLIYRGKLLFQG
DRQEAESKFSLTIQDESYSFQSSYPEREWFYQEFLKYPAILEQYLQNFDLASIGTVSDMM
PLYGENRIIVREGCKILFKLHKKETSHREGLFQLLQLMEFADNRVTSKDLGWGLGPMINS
AGRMNRTDVALNLLLEENPELAKSGAKELQKLNEERKERTKRNIFKVDSFLKRKKERTER
SVLFCYEPDFEPGVSGIVATRLVEEYKRPVLFITPDHGHAKGSIRAYGKENVLNLLKKAE
SVFLQFGGHKEAGGFSLEIDKIPELAKLIFDNADNWLAEEQMTSTSEQTESLISLKPEEL
NPKIFQELSIFEPFGHENPIPLYSIKNAKIYHTKPMTDGKHVRFRILGAPESIQCLIWNR
GKDFLELISKSVSLDLWGSLEESTFRSKTSLQFIVNYFQESEN
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgattcaaccctcccctttttcacacggcccaggcttaaaggagttacatcctgcgggc
ttgcgtccacattttagtccgcttcaacatagattctacgaaacacatctgcgggaaaaa
tctcatccagaacatcttctctatcacggtcttagagaacttccctctccttttttactc
ccggatttagaacccgctttagatcttttaaaagaattcattcaaaaagaaaaaaagatc
cttctattcggagacagagattgtgatggtgtatcttccacaagtttactcggaagtttt
ttaaaaaagattcatcgaggggaactgatccttaaaacctcaaacgaagaagactatggt
ctttgtcctgcggcacttgactttgttaaaagaatcaaaccggatcttttaatcactctt
gattttggtactacaaatcacatccagattgatgaacttgcatccataggaatcaaggtt
atagttttagatcatcatgaaatccccgaaagaattccggactgttatcttatttctcca
aaacgttcagattctatctaccccaatgaaaaaatctgcacttccgttttggctttaaag
tttattcaggcctatctttattcttctttagaagaatacaaccgcgcgacctggatcgga
gatggtaattccttattttcaggttttcttatataccgtggtaaacttctttttcaaggt
gatcgacaagaagcggaatctaaattttctcttactatccaagatgaaagttattctttc
caatcttcttatccagaaagagaatggttttatcaggaatttctaaaataccctgcaatc
ttagaacaataccttcaaaatttcgacttggcttccattggaaccgtttccgatatgatg
cctttatatggtgaaaatagaatcatcgttagagaaggttgtaaaattcttttcaaactt
cataaaaaggaaacttcacacagagaaggtcttttccaacttttacaactcatggaattt
gcagataatcgtgttacttcaaaagatttaggttggggactaggtcccatgatcaattcc
gccggaagaatgaatcgtacagacgtagcactgaatcttttgttagaagaaaatccagaa
cttgcaaagtcgggcgccaaagaacttcaaaaactaaacgaagaaagaaaagaaagaacg
aaaagaaatatcttcaaagtggatagttttttaaaaagaaaaaaagagagaaccgaaaga
tcagttcttttctgttatgaaccggactttgaaccgggagtttctggtatcgtcgccaca
aggcttgtagaagaatacaaaaggccggttttatttatcacccccgatcacggtcacgct
aagggaagtattcgtgcctatggcaaagaaaacgtattaaaccttcttaaaaaagctgaa
tctgtttttttgcaatttggaggacacaaagaagcaggtggtttttcattagaaatagat
aaaataccagaacttgccaagttgatctttgataacgcggacaactggctggcagaagaa
caaatgacttctacttcggaacaaactgaaagtctgatttccttaaagccagaagaattg
aaccctaaaatttttcaggaactttctatctttgaaccattcggccatgaaaacccaatt
ccattatactcaatcaaaaatgctaagatctatcatacaaaaccgatgacggatggaaaa
cacgttcgttttagaatcttaggtgcaccagaatcgatccaatgtttgatttggaatcgc
ggaaaagattttttagaactgattagtaagtcggtaagtctggatctatggggttctttg
gaagaatctacctttcgctccaaaacttctcttcaattcatagtaaactactttcaagaa
tcggaaaattaa
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