Leptospira interrogans serovar Lai IPAV: LIF_A3226
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Entry
LIF_A3226 CDS
T01983
Symbol
srmB
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lie
Leptospira interrogans serovar Lai IPAV
Pathway
lie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIF_A3226 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lie03019
]
LIF_A3226 (srmB)
03009 Ribosome biogenesis [BR:
lie03009
]
LIF_A3226 (srmB)
Enzymes [BR:
lie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LIF_A3226 (srmB)
Messenger RNA biogenesis [BR:
lie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LIF_A3226 (srmB)
Ribosome biogenesis [BR:
lie03009
]
Prokaryotic type
rRNA helicases
LIF_A3226 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
Glyco_hydro_2_C
MtrA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AER03992
LinkDB
All DBs
Position
1:4041507..4043057
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AA seq
516 aa
AA seq
DB search
MKKLKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAI
PTIELLEVESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRAL
RKNPQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQ
TIMFSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEY
RNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEILVAT
DVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIER
INGIKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEKLMGDDYTALDIAA
ALFKMTILKDSVTFDDSVQFESDFKYEEKHSTKKKSGGGRYRDRNFGRSGSGSRSKSNSN
SHFGNNSKDGSRSKFSKGDKNQKQGGGATSFKKKKK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactcaagtttagtgaactaaacttatccgccgagatccaaaacgcaatttta
gaaatgggttttgaagaagcttcaccgatccagtcagaagcaattccggttatattaaaa
ggaaaagatattatcggacacgctcaaaccggcactggtaaaaccgcagcgtttgcaatt
cctacaattgaactcctcgaagtagaaagtaaacatttacaagccttaattctttgtccg
actcgagaattggtgatacaagttagcgaacaatttcgcaagctaataaaatacaaaggc
aactttgaagttgttccaatttacggcggccaagagattgaaagacaacttagagccctt
cgcaaaaaccctcagatcgtaattgcgactccaggtagaatgatggaccacatgagaaga
ggttctatccacctcgacgaaatcaaaatcgtagttttagacgaagcagatgaaatgtta
gacatgggttttcgggaagatatggaattcatcttaaaggatacacctgcagatcgtcag
acaattatgttttccgctacgatgacggacgatgtacttactttgatgaaaaaatttcaa
aatcatccccaaattatagatgttactcatcagaaattgagtgctcctaaaattgaacag
atctactacgaaattcaagaaaacgcaaaaggagaagcccttgcgagattgatcgaatac
agaaatgtaaaactagcattagtattttgtaatacaaaagcgcaagtagatacggttgta
gaacttttgaaatccagaggttactttgcagaagcactccacggagacttgaatcaaaaa
caaagagataaagtgatgagcggttttagaaaaggaagcatcgagattttagttgcaact
gacgtggccggaagggggatcgatgtcaataacgtcgaagccgtttttaactacgatctt
ccaagagacggagaggactacgttcatagaattggtagaaccggaagagccggtaaaaaa
ggaatcgcattttcttttatcgtaggaaaacaaatctacaacttgaaaaaaatagaacgt
atcaacggaatcaaaatcgaagccggtaagattccaacgttagacgatttagaagaaaca
aaaattcattcttacacttctaaagtaagatccatcgtagacgccggtcatattggcaaa
tacgtaaaccaagtagaaaaactgatgggagacgattacacggctctcgacatcgccgcc
gccttatttaaaatgacaattttaaaagacagcgttacctttgacgattccgttcaattt
gaatctgattttaaatacgaagaaaaacattctactaaaaagaaatctggtggtggaaga
tacagagaccggaatttcggtagatccggttctgggtctagatccaaatcaaattcgaat
tctcatttcggcaataactccaaggacggttctcgttctaaattctccaagggagataaa
aatcaaaaacagggtggtggggctacttctttcaaaaaaaagaaaaagtaa
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