Leishmania infantum: LINJ_24_1120
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Entry
LINJ_24_1120 CDS
T01112
Name
(RefSeq) putative pre-mRNA splicing factor
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lif
Leishmania infantum
Pathway
lif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LINJ_24_1120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lif03041
]
LINJ_24_1120
Enzymes [BR:
lif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LINJ_24_1120
Spliceosome [BR:
lif03041
]
Complex C
Other components
Step II factors
LINJ_24_1120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_30
T2SSE
ATPase
ABC_tran
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
5069367
NCBI-ProteinID:
XP_001465938
UniProt:
A4I0U7
LinkDB
All DBs
Position
24:390655..393915
Genome browser
AA seq
1086 aa
AA seq
DB search
MDAVPADHGIKRPREANSPGHTPPFVSANDVAASLQEQAQRFISQLEMGEVLEHDRDTTE
AVMTGTDESAQWAYGSEYYLRHDGEDDKEHPSRSHTAGSTAAAAAAQESASDAQADKARK
VVVSLTVAPPSFFTSGNDFETSVLSRRSAAAANKDDDDDGGDLDRRGGFVASRFLHEALR
TSDVDIIVPVVSHSCSLAVSASKGSQTLAELKRLMDRERTNRDVMDTSKSSLTQLLQKDT
YGRMVNGEEKGVAGVGSGSAPGHAHSGSVSSFTDDRRNDNGEEEEAKYLMRQLRLEQERL
ADMARLRGASDASSTAPPPAAGGANSQWGSSQESRRQRKDEQLARIEGRKAQMETLADDA
DEVERRDAMRRQRESLPIHHCKDELLRYIGESAVTVVVGETGSGKTTQLVQYLYQRGYAR
HGKIIGCTQPRRLAAIGVARRVSDEMGCALGTTVGYSIHLDDTTTADTRVKFMTDGVLLR
ETVNDPSLDKYSVVMLDEAHERSVDTDVLMGVLKLALRRRGDLKLIVTSATMDVRKFSAF
FGNAPCYEIPGQTFPVKIHYSPTPVADYVAEAVFRVCQLHLQMPLEAKHDILVFMTGRED
VYGTCELIRRRLAELSPQHLSTLLIMSCLSEAASAWSTEIGVLDATPAGLRKVVVATNVA
ETSLTIDGVRYVVDCGFMKTNVYRPSIGMNTLQRYPTSQAQANQRKGRAGRTTEGTCYRL
YTEEQYAEEMLPNSVPEIQRSSVDSVVLLLKSIGVHRLCDFDFMDAPPAANVRSSMFHLW
VLGFLDDAGAITEQGQQALEFPMSPVLAKLLLESAKMGCALEMARIVAMISADPKNLFEL
PKGREKVAQQHHSRFYSNDSDHLTLLHVFTQYLDHGRSRQWAQDHFLHSPTLARANDVFA
QLIEKLRKVHLPIQSCGHAETDKVRHCLAKAFALQAARRSDRRWTEYRPLLNAGVACEVH
PASAVHARSEMPPYIIYNDLLLTHKEYLVMVTAVEPEWLVESSRGIYEMRHGVTSSSTTT
APSSFAVAVTTTPTPFTASRASRASMSSSPTAPSASGSSTKVCAETKAPTKKPAFGMLSS
KRRPNI
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagtgccagctgatcatggcatcaagcggccccgtgaagcgaattcaccgggt
cacacgccaccctttgtgtccgcgaacgacgtggccgcgtcccttcaggaacaggcgcag
cgcttcatctcgcagctcgaaatgggcgaagttctcgagcacgaccgcgacacgaccgag
gcggtcatgacaggcaccgatgagtccgcgcagtgggcgtacggcagtgagtactacctt
cgccacgatggagaagatgacaaggagcacccatcgcgctctcacaccgcgggcagcacc
gccgccgctgcggcggcacaagagagcgccagcgacgctcaagcggacaaggcccgcaag
gtcgtcgtcagcctaactgtggcgcctccgtccttcttcacgtctgggaacgatttcgaa
acgagcgtgctgtcgcgcaggtcggcagcagcagcaaataaggatgacgatgacgacggc
ggagacctcgacagacgcggcggattcgtcgcctcccgcttcctgcacgaggctttgcgg
acgtctgacgtcgacatcatcgtaccggttgtcagccactcgtgcagcctcgccgtgagc
gcctcgaagggtagccagaccctcgcggaactcaagcggctgatggatcgcgaacgcacg
aaccgcgacgtcatggacacgtccaagtcgagtcttacacagctcttgcaaaaagatacg
tacgggcgtatggtgaatggcgaagaaaagggagtggcgggggtggggagtggttctgcc
cccggccacgcgcacagcggcagcgtctcctccttcaccgacgaccgccgcaacgataat
ggcgaggaggaagaggccaagtacctcatgcgtcagctgcgcttggagcaggagcggctc
gctgatatggcacggcttcgtggcgcgtcggatgcctccagcactgccccaccccctgcg
gctggaggggcaaactcgcagtggggcagcagccaggagagccgccggcagcgcaaggac
gagcaactcgcccgcatcgaggggcgcaaggcgcagatggagacactcgctgatgacgcg
gatgaggtggagcgccgagatgccatgcgccgccagcgcgagtcgctgcccatccaccac
tgcaaagatgagctcctacgctacattggcgagagtgccgtcaccgtggttgtgggcgaa
accggcagcggcaaaacgacccagctcgtccagtacctgtatcagcgcggctacgcgcgg
cacggcaagataatcgggtgcacgcagccgcggcggttagccgccatcggggtggctcgc
cgtgtcagcgacgaaatgggctgcgcgctcggcaccacggtcggctattcgatccacctc
gacgacacgaccacggccgacacgcgcgtgaaatttatgacggacggcgtgctgctccgc
gagaccgtcaacgacccgtcactggacaagtacagcgtcgtgatgctggacgaggcccat
gaaaggtcagtggacacggacgtgctgatgggcgtgctgaagctcgccctacggcgccgt
ggagacctgaagcttatcgtcacctctgccacgatggacgtccgcaagttctctgccttc
ttcggcaacgcgccgtgctacgagattccggggcagacctttccggtgaagatccactac
agtccgacgccggtggccgactacgtcgccgaggccgtgtttcgtgtgtgccagttgcac
ctgcagatgccgctggaggccaagcacgatatccttgtcttcatgacagggcgggaggac
gtctatggaacgtgcgagctgattcgtcgtcggctagcggagctcagcccacagcatctc
agcacactcctcatcatgtcgtgtctctcagaggcggcctcggcgtggtccacggagatc
ggggtgcttgatgccacgccagcgggcctgcgcaaggttgtggtcgccaccaacgtcgcc
gagacgtcgctgacgatcgatggcgtgcgctacgtcgtggactgtggcttcatgaagacg
aacgtgtatcggccgtcgattggcatgaacacgctgcagcggtaccccacctctcaggcg
caggcgaaccagcgcaaaggccgcgccggccgcaccaccgaagggacgtgctaccgcctc
tatacagaggagcagtacgccgaggaaatgctaccgaacagcgttccagagattcagcgc
agcagcgtggacagcgtggtgctgctgctaaaaagcatcggcgttcaccgtctttgcgac
ttcgacttcatggacgctccgccggcagctaacgtgcggagcagcatgtttcacttgtgg
gtgctcggcttccttgacgacgccggcgccatcacagagcaagggcagcaggcgctggag
ttcccgatgtcccctgtgctggcgaagctcctgttggaaagcgcgaagatggggtgcgcg
ctggagatggcccgcatcgtcgccatgatttctgccgacccaaagaacctctttgagctc
cccaagggccgcgagaaggtggcgcagcagcaccatagccgcttttactcaaacgactcg
gaccacctgacgctgctgcacgtctttacgcagtacctggaccatggtcggtcgcggcag
tgggcgcaggaccacttcctgcactcccccactctcgccagggccaacgacgtgtttgcg
cagctgattgagaagctgcgcaaggtgcatctgcccatccaatcctgcggccacgcggaa
acggacaaggttcgccactgcctcgccaaagcctttgccctgcaggcagcgcgacgatca
gatcggcggtggacggaatatcggccgctgctgaacgctggcgtggcgtgcgaggtgcac
ccggcctccgcagttcacgcgcggagcgagatgccgccctacatcatctacaatgatctg
ctgctcacacacaaggagtacttggtgatggtgacggcggtggagccagagtggctggtg
gagagctcacggggcatctacgaaatgcgtcatggggtgacgtcgtcatcgacaacgacg
gcgccctcgtcgtttgcggtggcggtgacaacgactccgacgcccttcacagcctcccga
gcatcccgtgcatcgatgtcttcgtcgccgacagcgcccagtgccagcgggagcagcacg
aaagtctgtgcggaaaccaaggctccgacgaagaagcccgcgttcgggatgctgtcctcc
aagcgccggccaaacatctaa
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