Leishmania infantum: LINJ_24_2370
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Entry
LINJ_24_2370 CDS
T01112
Name
(RefSeq) TFIIH basal transcription factor complex helicase subunit
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lif
Leishmania infantum
Pathway
lif03022
Basal transcription factors
lif03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lif00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LINJ_24_2370
09124 Replication and repair
03420 Nucleotide excision repair
LINJ_24_2370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lif03021
]
LINJ_24_2370
03036 Chromosome and associated proteins [BR:
lif03036
]
LINJ_24_2370
03400 DNA repair and recombination proteins [BR:
lif03400
]
LINJ_24_2370
Enzymes [BR:
lif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LINJ_24_2370
Transcription machinery [BR:
lif03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LINJ_24_2370
Chromosome and associated proteins [BR:
lif03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LINJ_24_2370
DNA repair and recombination proteins [BR:
lif03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LINJ_24_2370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
DEAD
ResIII
SAPIS-gp6
Motif
Other DBs
NCBI-GeneID:
5069458
NCBI-ProteinID:
XP_001466027
UniProt:
A4I136
LinkDB
All DBs
Position
24:complement(848426..850867)
Genome browser
AA seq
813 aa
AA seq
DB search
MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL
HHHAHEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRPLRGLCLTAKKNLCIETS
VASLIHPDEVDAGCRSITAPWQQEGRCGYFDTLAQAPLELPPGVYSLDDLKDFGEQHHVC
PYYLVRKALPVVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGHNVDDVCIEAMSLI
LTKKDSLDAKQNMKDLSKELDHLKATNRQMLQDEYDRLVNGLAMTEMARDPEQRALVEAP
AIPANVAEGAIPASLRQANHFLAFMQRLVDFTHRIVARITRTYVADPLTFLTKLKEECAL
EISHFRYLSERLKVLLTTLQVTNAGKYRPVALIAQMYTLLSMYYTDDRYEKPGFVVVCEA
FDPTRPQIPDPVIRTVCVDASLALRDTFARYRSVILTSGTLSPMDIYPKILGFTPAISKS
FQMTLSRKCIAPVIVTRSSESVSITAEEVTSSFKVRTNPTAQALVTSAYESLLLELAKTV
PDGMVCFFTGYQYMGEVLLAWHSSGFLQKLAKHKLIFVETQGVEETSVALANYRRACDIG
RGAIFMSIARGKIAEGIDFDRHYGRAVVMFGVPFLPPNDEPLRQRMHWMEVCLGISESEF
RNFDAMRQASQCIGRVLRNKTDYGMMLLVDKRFALNDKVKKIPRWIVQCLKNNTNLSVDA
AVAVARGFFKEMAQPWEHEKDLGTTLLSKETLRRMGRLSSSAAKYASFSETLAAENVSTV
TAPTTEFEEIVGITAVREPGAGSRKRKRDGERE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgaagctctacgttgaggatgtgctcgtggtgttcccgtacgagtacatctatccggag
cagctggactacataacggagctgaagcgcggccttgacaagggaggacacatggtgttg
gagatgccgtcgggcactggaaagacaatctcactgctgtcgatcttggtcgcgtatctg
catcaccacgcccacgagaagcggaaggtggtgtactgcacccgaacagtggaggagatg
gtgaagacgatgggcgaaatgcggaagctgctgaagcactgggaggcggaaggcgagcag
cttcgaccgctgcgtggcctctgtctgacagcaaaaaagaacctgtgcattgagactagc
gtcgcctcgcttatacacccggacgaagtggacgccggctgtcgctcgatcacggctccg
tggcagcaggaagggcgatgcgggtattttgacacgctggctcaagcaccattagagctt
cctccaggtgtgtactcattggacgacttgaaagactttggtgagcagcaccacgtgtgt
ccctactacctggtgcgcaaggccctccccgtcgttgacattatcgtgcactcgtatctg
tacatggtggatcccgtagtgtcggaggtgacgaaggagttcctgaacgagaacacgatt
gtcgtgatggacgagggccacaacgtggacgacgtatgcatcgaggccatgtcactcatc
ctcacgaagaaagactccctggacgcaaagcagaatatgaaggacttgagcaaggagctg
gaccatttgaaggcgacgaaccggcagatgctgcaggatgagtacgaccgcctcgtgaac
gggctggctatgactgagatggcgcgcgacccagagcagcgcgcactggtggaggcgcct
gcgattccggccaacgtagctgagggcgccattcccgcgtcgttgcgccaggccaaccac
tttctcgcattcatgcagcgtcttgtcgactttacgcatcgcattgtggcgcgcatcact
cgtacatacgtggctgacccgctgacgtttctcacgaagctgaaagaggaatgcgcgctg
gagattagccacttccgctacttgtccgagcgcctgaaggtgctgctgacaaccctgcaa
gtcacgaatgccggcaagtaccgccccgtagcgcttatcgcacagatgtacacactgctc
tccatgtactacacggatgaccggtacgaaaaaccggggttcgtagtggtgtgcgaggca
tttgacccaacgcggccgcagattccagatcccgtcatccgcaccgtctgcgtggacgcc
tctctggcgcttcgggacacttttgcccggtaccgcagtgtcatcctcacctccggcaca
ctctcgcccatggacatttatccgaaaatcctgggatttaccccggccatctcaaagtcg
tttcaaatgaccctgtcacgcaagtgcattgcgccagtgattgtgacccgcagctcggag
agcgtgagcatcacagctgaggaggtcaccagtagtttcaaggtgcgcacgaacccaact
gcgcaggcgctcgttacatcggcgtacgagagcctgctactcgagctggcaaagacggtt
cctgacgggatggtgtgcttcttcacggggtaccagtacatgggcgaggtgctgctcgct
tggcacagctctgggtttctgcagaagctggcgaagcacaagctcatctttgtcgagact
cagggtgtggaggagacgtcggttgcactcgccaactaccgccgagcttgcgacattggg
cgcggcgccatattcatgtcgattgctcgcggcaagatcgcagagggaatcgatttcgat
cgccattacggtcgtgccgtggttatgttcggtgttccctttttgcccccgaacgatgag
cccctgcgacagcggatgcactggatggaggtgtgccttggcatatcagaaagcgagttt
cgcaacttcgatgcaatgcgccaggcgtcgcagtgcatcgggcgggtgctgcgcaacaag
acagactacggaatgatgcttctggtcgataagcgcttcgcgctcaatgacaaagtcaag
aagattccacgctggatcgtgcagtgcctgaagaacaacaccaatctgagcgttgatgct
gccgtcgcggttgcccgggggttcttcaaggagatggcgcagccatgggagcacgagaag
gacctcggcaccactttgctctcgaaagagactctccgaaggatgggtagactgagctca
tcagctgccaagtacgcatctttctcggaaaccctagctgccgagaatgtgagcaccgtg
acggcgccaacgacggagtttgaggagattgttggtatcaccgcagtgcgcgagccaggg
gccggtagtcgaaagcgcaagcgagatggtgagagggagtga
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