KEGG   Leishmania infantum: LINJ_28_0470
Entry
LINJ_28_0470      CDS       T01112                                 
Name
(RefSeq) putative rrp44p homologue
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
lif  Leishmania infantum
Pathway
lif03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lif00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LINJ_28_0470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lif03019]
    LINJ_28_0470
Messenger RNA biogenesis [BR:lif03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     LINJ_28_0470
SSDB
Motif
Pfam: RNB OB_Dis3 Rrp44_CSD1 CSD2 PIN_4 Rrp44_S1 OB_HELZ2 Dis3l2_C_term DUF3695
Other DBs
NCBI-GeneID: 5070264
NCBI-ProteinID: XP_001470079
UniProt: A4I3B7
LinkDB
Position
28:156685..159447
AA seq 920 aa
MNAMEDYRVQNIILLTTVMQEVQNRNKAMYARLQRLLGDDKKQCFVFANDRHEQTHCMRK
REESPNDFNDRAIRVAAQWYARHVVAAFPGMADSSTSSVIVVSHDRAFKQAMDASEEAQR
VSNLRCVSLRDYIKLAIASDSDLLEKIQYEEPEGMKESPSTRQLFTPHLGMAAMDAGVHD
GSLYKGKLRVSETSCFFGEIRGKFEGHTFQRILIQGRANMNRAIHDDVVAVQLLPVPSWR
GPKGSAPLSESASEEDAITAGFTPTGKVVGLLSSNRRPFCGSLDEGELEQVKANMSDNVS
ILFQPKNNRIPRIRISTRHVQDLMDKRLSVVIDDWPLYSSFPVGHYVEVLGKIGDRDTEA
MVILLENDVPHYDFSEAVHDCLPKGQWSVAKDEEARRLDLRDLCVVSVDPLGCRDIDDAL
HCRVVNGNHLEVGVHIADVTHFLHEGTAMDDEAAKRSTSVYLVDRRINMLPQLLTENLCS
LVEAEDRYAFSILWEFDENLNVVRDWFGKTIIRSRGALYYGDAQRMIDNPTDTSDIAVSL
RELMRLSKHFKAQREKDGALFLASQEFKFKVDNEHVNPTDMQVYQTFEANSMIEEWMLYA
NAAVATKVYESYPQWTLLRRHERPAEGAFDTLNDALYGKLHVRLDDTTSLTLNKSLDKCE
DPQDPYFNKLIRILTTRCLRQAQYFSSGGIPKDEFYHFGLAMPIYTHFTSPIRRYADVIV
HRQLAAAIGIENVSEQHMNTERMEAVAENLNYRHEQAQRAGRDSQNLFTGFYLRNFEDGK
IPDEEGYVVRVSETHVFVLVPKYGQESRIPREQLETVPRLLDRVKVAIQLKRQGDVMRTK
LVFRLIGLMRDGEEGGVLVADDEAYEVIEDSEEASEDAPRASQGAPATSVAAGDNDTKAA
EPEFKRARADGAETALPTSL
NT seq 2763 nt   +upstreamnt  +downstreamnt
atgaacgccatggaggactaccgcgtgcagaacatcatcctcctcaccacagtgatgcag
gaggtgcagaaccgcaacaaggccatgtatgctcggctgcagcgcctcctcggggacgac
aagaagcagtgctttgtcttcgcgaacgaccgacacgagcagacgcactgcatgcgcaag
agggaggagtcgcccaacgacttcaacgatcgcgcgattcgagtggcggcgcagtggtac
gcgcggcatgtggtagccgccttcccgggcatggcggactcatcgacgtccagtgtgatt
gtcgtttcgcacgatcgggccttcaagcaggctatggacgcgtcggaggaggcgcagcgg
gtgagcaacctgcgctgcgtatcgctccgtgactacatcaagctggccatcgccagcgac
tcggacttgctggagaagattcaatacgaggagccggaagggatgaaagagtcgccgtcg
acgcggcagctcttcacgccgcatctcggcatggccgccatggacgccggcgtgcacgac
gggagcctgtacaaaggcaagctgcgcgtcagtgagacaagctgcttctttggcgagatt
cgcggcaagttcgagggccacaccttccagcgcattctcatacagggccgcgccaatatg
aaccgcgcgattcacgacgacgtcgtggcggtgcagttgctgcccgtgccgagctggcgt
ggcccaaaaggctcagctcccctttcagagtctgcgagcgaagaagatgccatcacggcg
ggcttcacgcctaccggcaaggtggtgggcctactctcctccaaccgccggccgttctgc
ggcagtcttgatgagggtgagctcgagcaggtcaaggcgaacatgtcggataacgtctcc
atcctgtttcagcccaagaacaaccgaatcccgcgcattcgcatcagcacccgtcacgtg
caggacttgatggacaagcgtcttagcgtggtgattgatgattggcccttgtacagcagt
tttccagttgggcactacgttgaggtgctgggcaagatcggcgatcgtgacacggaggcg
atggtcattcttttggagaacgacgtgccccattacgacttcagcgaggcagtccacgac
tgccttccaaaggggcagtggtctgtggccaaggacgaggaggcaaggcggctggacttg
cgcgacttgtgcgttgtcagcgtcgacccgctggggtgccgcgatatcgatgacgcgctg
cattgccgcgtcgtgaacggcaatcacctcgaggtgggtgtgcacattgccgacgtcacg
cactttctgcacgagggcacggccatggacgatgaggcagcaaagcgcagcacgagcgtg
tacttggtggatcggcgcatcaacatgctgccacagctgctgacggagaacctctgctcg
ctcgtggaggctgaggaccgctacgccttttcgattctctgggagtttgatgagaacctg
aacgtggtgcgcgactggtttggcaagacaatcatccgctcccgcggcgccctttactac
ggcgacgcgcagcgcatgatcgacaacccgaccgacacctctgacatcgccgtttcgctg
cgcgaactgatgcggctcagcaagcacttcaaggcgcagcgcgaaaaggacggcgccctc
tttctggcgtcgcaggagttcaagttcaaggtggacaacgagcatgtcaacccaaccgac
atgcaagtctaccaaaccttcgaggcgaactcgatgatcgaggagtggatgttgtacgcc
aacgcggcggtcgcgacgaaggtgtacgagtcctacccccagtggacgttgctgcgccgc
cacgagcgacctgctgaaggcgcattcgacacgctgaatgacgctttgtacggcaagctg
cacgtgcgcctcgacgacacgacctctctgacgctgaataagtccctcgacaagtgcgag
gacccgcaggacccgtacttcaacaagctcattcgcatcctcaccacgcgatgtctgcga
caggcgcagtacttctccagcggtggcatccccaaggacgagttttaccactttggactt
gccatgcccatctacacccacttcacgtcgccgatacgccgctacgccgatgtcattgtc
catcgtcagctggcggccgccatcggcatcgaaaacgttagtgagcagcacatgaacacg
gagaggatggaggccgtagcagaaaacctcaactaccgccacgaacaggcgcagcgggcg
ggccgggactctcagaatctcttcaccggcttctacctgcgcaactttgaggatggaaag
atccctgacgaggaaggctacgtggtgcgcgtgtcggagacgcacgtctttgtgcttgtg
cccaaatacggtcaggagagccgcatcccgcgggaacagctggagacggtgccgcgcttg
ttggatagagtaaaagtggccatccagctgaagcggcagggcgacgtcatgcgcacaaaa
cttgtgttccgcctgattggcctgatgcgcgacggcgaggagggcggagtgctggtggca
gacgatgaggcgtacgaggtcatcgaggatagcgaggaagcttccgaggatgcacccaga
gcgtcacagggtgcgccggcaacatccgtagcggcgggtgacaacgataccaaggcagcg
gagccggagtttaaacgggctagagcagacggagccgagactgccctgccaacctcgttg
tag

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