Leishmania infantum: LINJ_28_0470
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Entry
LINJ_28_0470 CDS
T01112
Name
(RefSeq) putative rrp44p homologue
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
lif
Leishmania infantum
Pathway
lif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LINJ_28_0470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lif03019
]
LINJ_28_0470
Messenger RNA biogenesis [BR:
lif03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
LINJ_28_0470
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
CSD2
PIN_4
Rrp44_S1
OB_HELZ2
Dis3l2_C_term
DUF3695
Motif
Other DBs
NCBI-GeneID:
5070264
NCBI-ProteinID:
XP_001470079
UniProt:
A4I3B7
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All DBs
Position
28:156685..159447
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AA seq
920 aa
AA seq
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MNAMEDYRVQNIILLTTVMQEVQNRNKAMYARLQRLLGDDKKQCFVFANDRHEQTHCMRK
REESPNDFNDRAIRVAAQWYARHVVAAFPGMADSSTSSVIVVSHDRAFKQAMDASEEAQR
VSNLRCVSLRDYIKLAIASDSDLLEKIQYEEPEGMKESPSTRQLFTPHLGMAAMDAGVHD
GSLYKGKLRVSETSCFFGEIRGKFEGHTFQRILIQGRANMNRAIHDDVVAVQLLPVPSWR
GPKGSAPLSESASEEDAITAGFTPTGKVVGLLSSNRRPFCGSLDEGELEQVKANMSDNVS
ILFQPKNNRIPRIRISTRHVQDLMDKRLSVVIDDWPLYSSFPVGHYVEVLGKIGDRDTEA
MVILLENDVPHYDFSEAVHDCLPKGQWSVAKDEEARRLDLRDLCVVSVDPLGCRDIDDAL
HCRVVNGNHLEVGVHIADVTHFLHEGTAMDDEAAKRSTSVYLVDRRINMLPQLLTENLCS
LVEAEDRYAFSILWEFDENLNVVRDWFGKTIIRSRGALYYGDAQRMIDNPTDTSDIAVSL
RELMRLSKHFKAQREKDGALFLASQEFKFKVDNEHVNPTDMQVYQTFEANSMIEEWMLYA
NAAVATKVYESYPQWTLLRRHERPAEGAFDTLNDALYGKLHVRLDDTTSLTLNKSLDKCE
DPQDPYFNKLIRILTTRCLRQAQYFSSGGIPKDEFYHFGLAMPIYTHFTSPIRRYADVIV
HRQLAAAIGIENVSEQHMNTERMEAVAENLNYRHEQAQRAGRDSQNLFTGFYLRNFEDGK
IPDEEGYVVRVSETHVFVLVPKYGQESRIPREQLETVPRLLDRVKVAIQLKRQGDVMRTK
LVFRLIGLMRDGEEGGVLVADDEAYEVIEDSEEASEDAPRASQGAPATSVAAGDNDTKAA
EPEFKRARADGAETALPTSL
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccatggaggactaccgcgtgcagaacatcatcctcctcaccacagtgatgcag
gaggtgcagaaccgcaacaaggccatgtatgctcggctgcagcgcctcctcggggacgac
aagaagcagtgctttgtcttcgcgaacgaccgacacgagcagacgcactgcatgcgcaag
agggaggagtcgcccaacgacttcaacgatcgcgcgattcgagtggcggcgcagtggtac
gcgcggcatgtggtagccgccttcccgggcatggcggactcatcgacgtccagtgtgatt
gtcgtttcgcacgatcgggccttcaagcaggctatggacgcgtcggaggaggcgcagcgg
gtgagcaacctgcgctgcgtatcgctccgtgactacatcaagctggccatcgccagcgac
tcggacttgctggagaagattcaatacgaggagccggaagggatgaaagagtcgccgtcg
acgcggcagctcttcacgccgcatctcggcatggccgccatggacgccggcgtgcacgac
gggagcctgtacaaaggcaagctgcgcgtcagtgagacaagctgcttctttggcgagatt
cgcggcaagttcgagggccacaccttccagcgcattctcatacagggccgcgccaatatg
aaccgcgcgattcacgacgacgtcgtggcggtgcagttgctgcccgtgccgagctggcgt
ggcccaaaaggctcagctcccctttcagagtctgcgagcgaagaagatgccatcacggcg
ggcttcacgcctaccggcaaggtggtgggcctactctcctccaaccgccggccgttctgc
ggcagtcttgatgagggtgagctcgagcaggtcaaggcgaacatgtcggataacgtctcc
atcctgtttcagcccaagaacaaccgaatcccgcgcattcgcatcagcacccgtcacgtg
caggacttgatggacaagcgtcttagcgtggtgattgatgattggcccttgtacagcagt
tttccagttgggcactacgttgaggtgctgggcaagatcggcgatcgtgacacggaggcg
atggtcattcttttggagaacgacgtgccccattacgacttcagcgaggcagtccacgac
tgccttccaaaggggcagtggtctgtggccaaggacgaggaggcaaggcggctggacttg
cgcgacttgtgcgttgtcagcgtcgacccgctggggtgccgcgatatcgatgacgcgctg
cattgccgcgtcgtgaacggcaatcacctcgaggtgggtgtgcacattgccgacgtcacg
cactttctgcacgagggcacggccatggacgatgaggcagcaaagcgcagcacgagcgtg
tacttggtggatcggcgcatcaacatgctgccacagctgctgacggagaacctctgctcg
ctcgtggaggctgaggaccgctacgccttttcgattctctgggagtttgatgagaacctg
aacgtggtgcgcgactggtttggcaagacaatcatccgctcccgcggcgccctttactac
ggcgacgcgcagcgcatgatcgacaacccgaccgacacctctgacatcgccgtttcgctg
cgcgaactgatgcggctcagcaagcacttcaaggcgcagcgcgaaaaggacggcgccctc
tttctggcgtcgcaggagttcaagttcaaggtggacaacgagcatgtcaacccaaccgac
atgcaagtctaccaaaccttcgaggcgaactcgatgatcgaggagtggatgttgtacgcc
aacgcggcggtcgcgacgaaggtgtacgagtcctacccccagtggacgttgctgcgccgc
cacgagcgacctgctgaaggcgcattcgacacgctgaatgacgctttgtacggcaagctg
cacgtgcgcctcgacgacacgacctctctgacgctgaataagtccctcgacaagtgcgag
gacccgcaggacccgtacttcaacaagctcattcgcatcctcaccacgcgatgtctgcga
caggcgcagtacttctccagcggtggcatccccaaggacgagttttaccactttggactt
gccatgcccatctacacccacttcacgtcgccgatacgccgctacgccgatgtcattgtc
catcgtcagctggcggccgccatcggcatcgaaaacgttagtgagcagcacatgaacacg
gagaggatggaggccgtagcagaaaacctcaactaccgccacgaacaggcgcagcgggcg
ggccgggactctcagaatctcttcaccggcttctacctgcgcaactttgaggatggaaag
atccctgacgaggaaggctacgtggtgcgcgtgtcggagacgcacgtctttgtgcttgtg
cccaaatacggtcaggagagccgcatcccgcgggaacagctggagacggtgccgcgcttg
ttggatagagtaaaagtggccatccagctgaagcggcagggcgacgtcatgcgcacaaaa
cttgtgttccgcctgattggcctgatgcgcgacggcgaggagggcggagtgctggtggca
gacgatgaggcgtacgaggtcatcgaggatagcgaggaagcttccgaggatgcacccaga
gcgtcacagggtgcgccggcaacatccgtagcggcgggtgacaacgataccaaggcagcg
gagccggagtttaaacgggctagagcagacggagccgagactgccctgccaacctcgttg
tag
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