Leishmania infantum: LINJ_28_1660
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Entry
LINJ_28_1660 CDS
T01112
Name
(RefSeq) putative DEAD box RNA helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lif
Leishmania infantum
Pathway
lif03013
Nucleocytoplasmic transport
lif03015
mRNA surveillance pathway
lif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LINJ_28_1660
09122 Translation
03013 Nucleocytoplasmic transport
LINJ_28_1660
03015 mRNA surveillance pathway
LINJ_28_1660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lif03019
]
LINJ_28_1660
03041 Spliceosome [BR:
lif03041
]
LINJ_28_1660
03009 Ribosome biogenesis [BR:
lif03009
]
LINJ_28_1660
03012 Translation factors [BR:
lif03012
]
LINJ_28_1660
Enzymes [BR:
lif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LINJ_28_1660
Messenger RNA biogenesis [BR:
lif03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LINJ_28_1660
mRNA cycle factors
Stress granule specific factors
LINJ_28_1660
Spliceosome [BR:
lif03041
]
Complex C
Other components
EJC/TREX
LINJ_28_1660
Ribosome biogenesis [BR:
lif03009
]
Eukaryotic type
90S particles
Helicases
LINJ_28_1660
Translation factors [BR:
lif03012
]
Eukaryotic type
Initiation factors
eIF-4
LINJ_28_1660
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
TelK_muzzle
Motif
Other DBs
NCBI-GeneID:
5070380
NCBI-ProteinID:
XP_001470194
UniProt:
A4I3N2
LinkDB
All DBs
Position
28:579359..580528
Genome browser
AA seq
389 aa
AA seq
DB search
METEQVDNIQANVLAIPTFEAMGLKEDLLKGMYSFGYKKPTAIQKRFIMPFLKGRDVIAQ
ASSGTGKTSAFCVCLLQACDPHTRETQALILSPTRELAVQTQDLCNNIGHHMGLTAYACI
GGKSTEEDIRRLESGVHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQI
HDIYRMVPPLQIILVSATLPADVLEMTEKFMTEPASILVKRDEITVDSVKQYFVSVDEEK
NKFDVLMELYDSLTIAHAVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQ
FRNGHSRVLITTDLWARGIDVERVSLVLSYDLPLAREQYIHRIGRTGRMGRTGLAITFVR
HDELRLLRDIEQFYATQIEELPANIGEQM
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagacggagcaagtagataatattcaggccaacgtgctggccatcccaacctttgag
gcgatggggttgaaggaggacctcctcaagggcatgtacagcttcggttacaagaagccc
accgccattcagaagcgcttcattatgcctttcctaaagggacgcgacgtgattgcgcag
gcgtcttctggtacgggcaagacgtccgccttctgcgtctgtctcctgcaagcgtgcgac
ccgcacacgcgtgagacgcaggccctcatcctctcgccgactcgcgagctggcggtgcag
acgcaggatttgtgcaacaacattggccaccacatggggctgacggcgtacgcgtgcatc
ggtggcaagagcacagaggaggacatccgccgtctcgagagcggtgtgcacatcgtctcc
ggcacgcccggccgcgtctttgatatgatccgccgcaagagccttcgcgtaaatgggctg
aaaaccctcgtgctggacgaggctgatgagatgctgggcaagggcttcaaggctcagatt
cacgacatctaccgcatggtcccgccgctgcagatcatcctcgtgtcggcgacgctgccg
gccgacgtgctggagatgacggagaagttcatgacggagcccgcgagcattctcgtgaag
cgggatgagatcaccgtggatagtgttaagcagtactttgtctccgttgacgaggagaaa
aacaaattcgatgtcttgatggagttgtacgacagtctcacgatcgcccacgccgtggtc
ttctgtaacacccgcaaaaaggtggagcagctcgccaagaagatgacgcgcgagaagttc
gctgtaaccgccatgcacggcgacatgccccaggcggagcgcgacgagattatgcggcag
ttccggaatgggcacagccgcgtgctcatcacaacggacctgtgggcgcgtggcattgat
gtggagcgcgtctcgctcgtcctcagctacgatttgccgctcgcgcgtgagcagtacatt
caccgcatcggccgcactggtcgcatgggccgcactgggctggccatcaccttcgtgcgc
catgacgagctgcgcttgctgcgcgacatcgagcagttctacgcgacgcaaattgaggaa
ctccccgcgaatatcggcgagcaaatgtag
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