Leishmania infantum: LINJ_32_0750
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Entry
LINJ_32_0750 CDS
T01112
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4p
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
lif
Leishmania infantum
Pathway
lif03018
RNA degradation
lif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LINJ_32_0750
09123 Folding, sorting and degradation
03018 RNA degradation
LINJ_32_0750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lif03019
]
LINJ_32_0750
03041 Spliceosome [BR:
lif03041
]
LINJ_32_0750
Messenger RNA biogenesis [BR:
lif03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LINJ_32_0750
mRNA degradation factors
5'-3' decay
Lsm complex
LINJ_32_0750
Spliceosome [BR:
lif03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
LINJ_32_0750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
5071815
NCBI-ProteinID:
XP_001467757
UniProt:
A4I7N8
LinkDB
All DBs
Position
32:252710..253303
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AA seq
197 aa
AA seq
DB search
MTSTTSCTNLNACLALTCFFNPSGLLSGSLAPLFCDSHPPFLLPPSLPTRMQAHLEAARG
ALHRIFCCYRAHPHSLKQTFRMSFARRPITPIEILRNCRGKEVSIELADGETVNGTVMRT
DRAMNVVIKQCTRTGADGESFWKSRECFIRGASVKNVRMTDSALVAVPAPSKRKAAGGKG
TDTHKEKSVGGGKRPRK
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgactagcaccacgtcatgcaccaatttaaacgcctgtcttgcactcacttgttttttc
aacccctctggtcttctcagcggatctcttgcgcctctgttttgtgactcgcacccacca
ttcctcctccccccttccctgcccacacgcatgcaggcacacctcgaggcggcaagaggt
gccctccacaggatattttgttgttaccgtgcacaccctcactccctcaaacagacattc
agaatgagcttcgcacgccggccaatcactcccatcgagatcttgcgtaactgccgcggc
aaggaggtctccatcgaacttgcggacggcgagacggtgaacggcaccgtcatgcgcacg
gatcgtgccatgaacgtggtaatcaagcagtgcactcgcactggcgctgacggcgagtcg
ttttggaagtcgcgtgagtgctttatccgtggcgccagcgtcaaaaacgtgcgtatgacg
gacagtgcacttgtcgccgtgccggcgccatcgaaacgcaaggcggcgggcggcaaaggc
accgatacccacaaggagaagtcggtaggaggtggcaagcggccacggaagtag
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