Leishmania infantum: LINJ_34_2030
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Entry
LINJ_34_2030 CDS
T01112
Name
(RefSeq) ATP-dependent RNA helicase-like protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lif
Leishmania infantum
Pathway
lif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LINJ_34_2030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lif03041
]
LINJ_34_2030
03009 Ribosome biogenesis [BR:
lif03009
]
LINJ_34_2030
Enzymes [BR:
lif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LINJ_34_2030
Spliceosome [BR:
lif03041
]
Complex A
U2 snRNP components
U2 related factors
LINJ_34_2030
Complex B
LINJ_34_2030
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
LINJ_34_2030
Ribosome biogenesis [BR:
lif03009
]
Eukaryotic type
90S particles
Helicases
LINJ_34_2030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
AAA_19
HA2_N
SRP54
AAA_16
AAA_7
AAA_30
nSTAND3
ABC_tran
AAA_29
AAA_25
ResIII
TrwB_AAD_bind
Flavi_DEAD
ATPase
AAA_23
Motif
Other DBs
NCBI-GeneID:
5072653
NCBI-ProteinID:
XP_001468575
UniProt:
A4IA06
LinkDB
All DBs
Position
34:complement(872751..875177)
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AA seq
808 aa
AA seq
DB search
MLSWVKTHMLLHPALHRLALLFFLYCGKSCTLPTAHLMALKRVREEAAENGEAGLGDTLV
SQLPKKRPEVAVCTSSSALSPFTRQPFSARYRQLLQSRQRLPVFEKRHLIQETVRTNSVT
LLVGETGSGKTTQVPHFLAELQDTFTGVIACTQPRRIAAISVATRVAEEMDVPLGAHVGY
HVRFDSRQCDATRVLYMTDGMLLREAFTDSDLQKYSVVVVDEAHERTIDTDVVLGLLKRL
LTRRPLFRLVVMSATLDVAKIQSYFPGAPLVHVSGRMHDVDVLYMPHPVRDYVEATVSCV
LQLHEREPAGDILCFLTGEAEIERAVAALHQALGSSSAAASKEQEAPVQGPGKDLTLFNT
PADDLARPARPTEVVVLPLYGSLSLQEQQKVFATYPPNTRKIVVATNIAETSVTIDGIVY
VVDCGYQKQSLYNSEARVDYLLPAVISKASAEQRKGRAGRTRPGKCFRLFTSADFATFPD
QTHPEILRTNIVNTVLLLLTLGVANPCEFPFIDPPSDQGMSDAFYQLLYFGAVDDGLQLT
DFGRRMAVFPVDVCLARMLLMAPKHGCGADAAVVAAMLEAGNAFSRPPSRLAEAREAHAR
FDDADGDHVVLFRVFHAYFKNQQNGKRFCYENYLRHQTLQQAVQVYNQLRRLMSQLTIPV
QSTYIPEREYVDTVALRKAVLEGFFTQVAFLTPVAPITHTAGADPTTRVYRTVRDALSVT
LHRQSVLAATHKSRALPTWIVFDRLEVQGDSGTFIRTASAVEVGWLLDVSDFYTDLSEIP
DGEIAQVLRRAREAESSVHAGKAERESV
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgctctcgtgggtgaaaactcacatgctcttgcaccccgccctccatcgtcttgcgttg
cttttctttttgtattgtggcaaatcttgcacattgcctacagcgcacctcatggccctc
aagcgcgtgcgcgaagaggctgccgagaacggcgaggccggcctcggcgacacactggtc
tcccaactcccgaagaagcgtcctgaggtggctgtctgcacctccagctccgcattgagc
cctttcacgcggcaacccttctcagcccgctaccgtcagctgttgcagtcgcgtcagcga
cttcctgtgttcgagaagcgccaccttatacaggagacggtgcgaaccaactctgtcacg
ttgctcgtgggcgagacgggcagcggcaagacgacgcaggtccctcactttcttgcggag
ctgcaggacaccttcaccggcgtcatcgcatgtacgcagccacgtcgtatcgcggccatc
tccgttgccactcgcgtggccgaagaaatggacgtgcccctcggtgcgcatgtcggctac
cacgtccgcttcgactcgcgccagtgcgacgccacgcgggtgctctacatgacggatggc
atgctgctccgtgaagcgttcacggattcggacctccaaaaatacagtgttgtggtggtg
gacgaggcgcacgagcggacgatcgacacggatgtggttctcggcctcctgaagcgactc
ctcacacggcgtccgcttttccgactggtggtcatgtcggccacgctggacgtggcaaag
attcagtcctacttccccggtgcgcccctcgtgcacgtctcggggcgcatgcacgacgtg
gacgtcttgtacatgccacatccggtgcgcgattacgtggaggcgactgtgtcgtgcgtg
cttcagctgcatgagcgcgagccggccggggatatcctctgcttcttgactggcgaggcg
gagattgagcgggctgtcgcggcacttcaccaggccctcggctcgagctctgcggccgcc
tccaaggagcaagaagcgccggtgcaggggcccggaaaggacttgacgcttttcaatacg
ccggcggacgacctggcgcggccggcgcggccgacggaggtggtggtgctgcctctctac
ggttctcttagcctccaggagcagcagaaggtgtttgccacctatccccccaacacgcgc
aagattgtcgtggccacgaacattgccgagacgtccgtcaccattgacggcattgtctac
gttgtggactgcgggtatcagaagcagagcttgtacaactccgaggcacgcgtggactac
ttgctgccggcggttattagcaaggcctccgccgaacagcgcaagggtcgcgctggtcgt
acgcggcctggcaagtgcttccgcctcttcacgtcggccgactttgccacttttcccgat
caaacgcatccggagatactacgcacgaacattgtgaacaccgtgctgctgctgctcacg
cttggcgtcgctaacccgtgtgagttccccttcatcgacccgccctcggaccagggcatg
agcgacgccttctaccagctcttgtacttcggcgccgtggatgacgggcttcagctcacg
gactttggccgacgcatggccgtattccctgtggatgtctgcttggcacgaatgctgctc
atggcccccaagcacgggtgcggtgccgacgccgcggtggtggcggcgatgctggaggct
ggaaacgcgttcagccgcccgccatcgcggttggccgaggctcgcgaggcgcacgcgcgc
ttcgacgacgccgacggcgaccacgttgtgctctttcgcgtctttcacgcgtacttcaag
aaccagcagaacggcaaacgcttctgctacgagaactacctacgacaccagaccctacag
caagcggtgcaggtgtacaaccagctgcggcggttaatgagccaactcacgataccagtg
cagtccacctacatcccggagcgcgagtacgtggacacggtggcgctccgcaaggccgtg
ctggagggattcttcacacaggtcgccttcttgactcccgtggcacccatcacccataca
gctggagcggacccgacgacgcgcgtctaccgcaccgtccgggacgccttgagtgtgacg
ctgcatcgtcagtccgtgcttgcggcgacgcacaagtcacgcgcgcttccgacctggatc
gtgtttgaccgtctggaagtgcaaggggactccgggacgtttatccgaaccgcctcagca
gtggaggtgggctggctgctggacgtcagtgacttctacacggacctcagcgaaatccca
gacggcgagattgcgcaggtgctgcgccgtgctcgtgaggcggaaagtagcgtacacgcg
ggcaaagccgagcgcgagagtgtgtag
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