Leishmania infantum: LINJ_35_4000
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Entry
LINJ_35_4000 CDS
T01112
Name
(RefSeq) U5 snRNA-associated splicing factor
KO
K12856
pre-mRNA-processing factor 8
Organism
lif
Leishmania infantum
Pathway
lif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LINJ_35_4000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lif03041
]
LINJ_35_4000
Spliceosome [BR:
lif03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
LINJ_35_4000
Complex C
U5 SnRNP specific factors
LINJ_35_4000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
U5_2-snRNA_bdg
PRO8NT
RRM_4
PROCT
DUF5480
Motif
Other DBs
NCBI-GeneID:
5073297
NCBI-ProteinID:
XP_001469202
UniProt:
A4IBT3
LinkDB
All DBs
Position
35:1542602..1549885
Genome browser
AA seq
2427 aa
AA seq
DB search
MSVSVPPGFEDDDDLATVDPALLAEMEEEEQKESRKQQILTWQRMNTERYGFRAAYREAV
GEKDLMPPEFIRKVVKDNGDLGGKRFKSERKLCVGMLPYIPLALLKLLENMPMPWEEARY
VTVVYHVGGVLTIVDDTPTVAEPLYVSQWGSMWTKMRANKVELLQEGGGFRRAVHKGDEN
EPPLDFADYLMDRVPPPPVLDDLDEEDNASIVGWFYDPFPRLVAPNQIRGPRRPNGYYFN
LDVMEALYRNASPILPTLDDRNYFYLWDLKSFYAAKAMHLSIPRGPKFEAPPAIRVKQDE
DDDWTEFNDLRRIIHRDNPRKPRFTMLTERQIAFPFLYGSVVDGVELAPYHYPATVRVEN
DDPELPCFTFHPSLNAIKAVEKNYTDVPRAQAALCSSTWHRAGGQHVETAADVPLELPDD
FEPFLSSLPLEQPNTKTGLSLLFAPAPYNSFEGGMKRRIDVPLCDKWYQDPPDLLTTDDR
DKILRSYTQLLKHHVKRSLQHTVRQRSSSATAATAAEGAGTMDMSAMQEKRRLEKMAGMR
YFSKTRMEWLEAGLQVMRQGHNMLVQLINMKCLPYVHIDYNFEAKPTRTLTTKEIKKSRL
GPAFHMIRELLGFMKRLIDMHVMYRLGSTDALQLADATQYLFSHVGVLTGVYRYKLRAMR
QIKRSRDLKHMLYSKFNVGGVPSGPGNGFWGPAWRVWVFFMRGMTPLLQRYLSNLTDRVL
HGRLQKGKMSGKKITRQRVEPDKDVNIKEAFRRELREMLPDNVKASVIVTMDQHMNEAFR
HWRAGLPWSVPGLAKPLTDLVGKYVKLRSEEYIRTTQLQRRRIAEGDTVDKQAFMKNLGR
LTRLKLMDEQRRQRRYMTGEDAAAIMAPAEATEIYRMMANWLNDRGFKKISFPDPSKTAE
LSLLQLSLNRLRDQHNIANRLTANQREEQARIEESFNAPHEALSRIVDALAHQRRFKNVE
VEYMDNFSHLYPLYTVVPQEKMIDSFLDQYLWYKAMNVQRLFPNWVKPSDVEPLPQLVYK
WCEGINNIPDIWDVSHDESVVLLHSNLEDAFYDNVDWNFFRPMLELIMDKSLVDYIVSRH
DVVVEFKDMSYHHYKGLIRGFMFSSFLAQYWGLVMDVLLLGTQRSKEIAGTALKPNPFMS
FFRDPYLAASHPIRAYCRYKNEVYIVVRYTKTEADEVRRRYLEETKSDPEMRAINASVYG
FKNAKEWPRDARMRLFLSDVNLARAVLWEFRSRLPPSMATINDANSFVSVYSKDNPNLLF
EMAGFSVRLLPVVRTEADILESESMWSLRNHTTKDISCRAFLQVTKEHINMIRNKARRTV
MMVGSSTFHSIAAKWNALITEIVPYYREAILGTEELQAILARAEHRMQARVMMALNSRAK
SRFPPAMFYAPSDLGGLGMLSVGHSLIPAKDTIYSKTTSTGVQFFYAGLTNEEGIPIPNV
LQYYTPWETEIKESEKAWLEFRTREREAKARGGRVSLDDIEDIIDKGIPRIRVRFSRHAP
LFHFDTGFRARMEFQRYLAGKYLKNWWFHMEHDGNICGGVMERYRADMNNALGGVEAILE
HSLFKGTGFPSWEGIEFDRSGGFENSKKDTKLAKQQRAGLSKVPNQRFALWWSPTINRSD
IQAGFESKVETTGVFMCGKLETIKKSLIKIFSGSLWEKSHGAVVNDVASKLKDSLMDLGA
ASITLQQQHPQKSYTFTSSAADVILVSAARWSVSSKPTSLADEVGDVYQHSTTSKFWIDV
QLRWGNYDSHNIAEYARKKFYEYSTARMYPFPAGIVVAIDLAYNCHSAFGYWIPGMKPFM
SKLMPVIMKNNITLNTLRDRMKRDLGLFSSAPTEASLSDTNIAELFSSGMRTWIVDDSAT
YVTSEQPTPDGGKKFKSENGAVLVFEPVSGSLKMSVVHRSVFSGQKRRSKLAREKAAEEI
ASWLRSCPPSERPSKIIVTRSRFRQTLHNMLVLDYPNIIIGQSDLNLPLPMVLRHSRLVE
LRIAAMESKGWEFCIYDDWQQSLQFQPITCFNLLNLVLRGYHINLQRTRQILVPDLHVEV
SASHFWPTYATRQEWEQVSIRLQEMIIADAARRMNVSPKDFTEKEKEGILLGKRMANVEI
QQEEMKEIEAMRRTKLAETQTVNVVTNSGDVVKRKVKAAFDFGATALNNNWRPRSLADAA
FLDENTPITFDAAGATGASDQLIFSEDAIQKLLACCDVKVQCCAYMFGHALPDSPNIKEV
LCVMIPPQFGTAVEARTPPRIPFDAAALQEANLSFLGLMRIGESEAQLTSHDLALQARAL
IANEGMVPQGFVTAVLEMSEEGVMARCYSTTADGIAWAQSEHERLLKRTPEATDPSFSSP
CRGTLSSEARSFFLVPADRVWNYFFKGALWRENTEYDVVVDVPLPFFHALHRPDHFLNFT
RIGDGAEVVDETDPNDVFGNEAGLAGD
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgtcggtccctcctgggtttgaggacgatgacgacctggccactgtcgaccct
gcgctacttgcggagatggaggaggaggagcagaaggagtcgaggaagcagcagatcctt
acatggcagcgcatgaacacggagcgatacggcttccgcgcggcgtaccgggaggcagtg
ggggagaaagacctgatgccgccagagttcatccgcaaggtggtgaaggacaatggtgac
ctcggcggaaagcgcttcaaatcggagcgcaagctgtgcgtgggtatgctgccctacatt
ccactggctctgctcaagctcctagaaaacatgccaatgccctgggaggaggcgcgttac
gtgaccgtagtgtaccacgtcggaggcgtgctcaccatcgtggacgacacccccacagtg
gcggagccgctgtacgtgtcacagtggggttcgatgtggacgaagatgcgcgccaacaag
gtagagctgcttcaagaaggtggcggcttcaggcgcgcggtgcacaagggagacgaaaac
gagccgccgctggactttgccgactacctcatggaccgcgtgccgcctccaccggtgctc
gacgatctcgatgaggaggacaacgccagcatcgtgggctggttctatgacccttttccg
cgcctggtggctcccaaccagattcgcggccctcggcggcccaatgggtactacttcaac
cttgatgtgatggaggcgctataccgcaacgcgtcacccattctgccgacgcttgacgac
cgcaactacttttacctgtgggacctcaagtccttctacgctgccaaagcgatgcacctg
tccattccacgcggcccgaagttcgaggccccacctgccattcgcgtgaagcaggacgag
gacgacgactggacggagttcaacgacctgcgtcgcatcatccaccgcgacaatccgcgc
aagccgcgcttcacgatgctgacggagcgacagattgccttccctttcctgtatggctca
gtggtggacggggtcgaactggccccgtatcactacccagccaccgtgcgcgtcgagaac
gacgaccccgagctaccgtgctttactttccacccatcgctgaacgcaatcaaagcagtg
gagaagaattacacagacgtgccgcgcgcgcaggccgcgttgtgctcctctacctggcat
cgcgcgggcggccagcatgttgagaccgccgcggacgtgccgttagagctgccggacgac
tttgagccgtttctgtcatcgctcccgctggagcagcccaacacgaagacgggcctgtcg
ctgctttttgctccggcgccctacaactcttttgagggaggcatgaagcggcgcatcgat
gtgccgctgtgcgacaagtggtaccaggacccaccggacctgctcacgacggacgaccga
gacaagattctgcgcagctacacccagctactcaagcaccacgtgaagcgctccctgcag
cacaccgtgcgccaacggagcagttccgcgaccgccgccacagcagctgaaggggcgggg
acgatggacatgagcgcgatgcaggagaagcgccggctggagaaaatggcagggatgcgg
tacttttccaagacgcgcatggagtggctagaagcggggcttcaggtgatgcggcagggc
cacaacatgcttgttcagctcattaacatgaagtgcctgccgtatgtgcatatcgactac
aacttcgaggcgaagccgacccgcacgctgacgacgaaggagatcaagaagagccggctc
ggccccgcgtttcacatgatccgtgagctgctaggcttcatgaagcggctcatcgacatg
catgtgatgtatcggttagggtcgactgacgcgctgcagttggcggatgctacccagtac
ctcttctctcacgtcggcgtcctgacgggggtgtaccgctacaagttgcgggctatgcgg
cagatcaagaggagtcgtgaccttaagcacatgctgtacagcaagttcaacgttggcggc
gtgccaagtgggcctggaaacggtttttggggcccggcgtggcgtgtgtgggtattcttt
atgcgcggcatgacaccgcttcttcagcgctatctgagcaatctgaccgaccgcgtgctg
cacggtcgtttgcagaaaggcaagatgtcgggcaagaaaatcacgcgtcagcgggtcgag
ccggacaaggacgtgaacatcaaggaggcgttccgccgtgagctgcgagagatgctgccg
gacaacgtgaaggcttcggtcattgtgacgatggaccagcacatgaacgaggcgttccgg
cactggcgcgccggcctgccgtggagcgtgcctgggcttgcgaagccgctgacagacctc
gtcggtaagtacgtgaagcttcgctctgaggagtacatccgcacgacgcagctgcagcgg
cgccgcattgcggagggggatactgtggacaagcaggccttcatgaaaaacctagggcgc
ttgacgcgactgaagctcatggatgagcagcgccgccagcgtcgatacatgacaggggag
gacgccgccgcgatcatggcgcccgctgaggcgacggagatttatcgcatgatggcgaac
tggctcaacgaccgcggattcaagaagatatccttcccagacccgtccaagacggcagag
ctgtcgctgctgcagctttccctcaatcgactgcgtgaccagcacaacatcgcgaaccgc
ctcacggcgaaccagcgtgaggagcaggcccgcatcgaggagtcctttaacgcgcctcac
gaggccctgtcccgcatcgtagacgcccttgcacaccagcgccgcttcaaaaacgtcgag
gtggagtacatggacaacttttcacacctgtacccgctctacactgtcgtgccgcaggag
aagatgattgactccttcctcgatcagtacctctggtacaaggcgatgaatgtgcaacgt
ctcttccccaattgggtgaaaccgtccgatgtggagccgttgccacagctggtgtacaag
tggtgtgagggcatcaacaacatccccgatatatgggacgtatcgcacgacgagtctgtg
gtgctgttgcacagcaacctggaggatgcattctacgacaacgtggactggaacttcttc
cgtccgatgctggagctgatcatggataagtcgctcgtcgactacattgtgagccggcac
gatgtcgtggtggagttcaaggacatgagctaccatcactacaaggggcttatccgcggc
ttcatgttttcgtcattcctggcgcagtactgggggctcgtgatggatgtgctgctgctc
ggcactcagcgaagcaaggagattgccggtacggcgttaaagccgaacccattcatgtct
ttcttccgagacccatacctcgccgcgtcgcatccgattcgcgcgtactgcaggtacaag
aacgaggtctacatcgtggtgcgctacaccaagacggaggcggatgaggtgcggcgccgc
tacctggaggagaccaagtcggatccggagatgcgtgcgattaacgcatccgtctatgga
ttcaagaacgcgaaggagtggccacgcgacgcacggatgcgccttttcctgtccgacgta
aacttggcgcgcgcggtgctatgggagttccgcagccgcctgccgccgtcgatggcgacc
atcaacgacgcaaacagcttcgtcagcgtttactccaaggacaaccccaacctgctcttc
gaaatggcaggcttctccgtgcggctgctgccggtggtgcggaccgaggcggacattctc
gagagcgagtctatgtggagtctgcgcaatcacacaaccaaggacatctcctgccgagcc
ttcctgcaagtgacgaaggagcatatcaacatgatccgcaacaaggcgcgccgcactgta
atgatggtcggcagctccacctttcacagcatcgcggccaagtggaacgcgctgattacg
gagattgtgccatactatcgcgaggcgattctcgggacggaggagctgcaggcgatcctg
gcgcgcgcggagcaccgcatgcaggcgcgtgtgatgatggcgctgaactcgcgcgccaag
tcgcgcttcccaccggcgatgttctacgccccgtccgatcttggcggcctcggcatgctc
tcggtcggacactcgctgatccctgcgaaggacaccatctactcgaagacgaccagcacg
ggcgtccagttcttctacgccggcctcactaacgaggagggcatcccgatccccaacgtg
ctgcagtattacacgccgtgggaaacggagatcaaggagagcgagaaggcatggctggag
ttccgcacccgcgagcgtgaggccaaggcgcgtgggggccgcgtgtcgctggacgacatc
gaggacatcatcgacaagggcatcccgcgcatccgcgtgcgcttctcgcgacacgcgccg
ctcttccacttcgacaccggcttccgggcacgcatggagttccagcgatacctggccggc
aagtacctgaagaactggtggtttcacatggagcacgacggcaacatctgcggcggcgtg
atggagcgctaccgcgctgatatgaacaacgccctcggtggtgtggaggcgattttggag
cacagcctcttcaaggggacgggctttccgtcgtgggaaggcatcgagttcgaccgctct
ggcggctttgaaaactcgaagaaggatacaaaactggcgaagcagcagcgtgccggtctg
agcaaggtgccgaaccagcggttcgcgctttggtggagccctacgatcaaccgctccgac
atccaggccggcttcgagtcgaaggtggagacgacgggtgtcttcatgtgcggtaagctg
gagaccatcaagaagtcgctcatcaagatctttagcggctctctctgggagaagtcacac
ggcgccgtcgtgaacgacgtggcgagcaagctgaaggacagcctcatggaccttggcgca
gcctccataacgctgcaacagcagcacccacagaagtcctacaccttcacgagctcggct
gccgatgtcatattggtgagcgcggcgcgctggtcggtatcgtcgaagccgaccagtctc
gccgacgaggtcggcgacgtgtaccaacacagcaccacctcgaagttctggatcgatgtg
cagctgcggtggggaaactacgacagccacaacattgccgagtacgcgaggaagaagttc
tacgagtactcgacggcgcgcatgtatccgtttcctgccggcattgtcgttgcgattgac
ctggcctacaactgccacagcgcgtttggctactggatacctggcatgaagccgttcatg
agtaagctgatgcccgtcattatgaagaacaacatcaccctcaacacgctgcgcgaccgc
atgaagcgcgacctgggactcttcagctctgccccgacggaggcgagcctgtccgacaca
aacatcgctgagctgttctccagcgggatgcgcacgtggattgtagacgacagcgccacg
tatgtgacgagcgagcagccgaccccagacggcggcaagaagttcaagtccgagaatggc
gcggtgctcgtctttgagcccgtctccggctctttgaagatgagcgtggtgcaccggagc
gtcttttccgggcagaagcgccgctcgaagctggcgcgcgagaaggcagcggaggagatt
gcgtcgtggctacgtagctgcccgcctagcgagcgtccgagcaagatcatcgtcacccgc
tcccgcttccgccagacgctgcataacatgctggtgctagactacccgaacatcatcatt
ggccaaagcgacttgaacctgccgctgccgatggtgttgcgtcacagccgcctcgtcgag
ctgcgcatcgcggcgatggaaagcaaagggtgggagttctgcatctacgacgactggcag
cagagtctgcagttccaaccgatcacgtgcttcaacctactgaacctggttctgcgtggc
taccacataaacctgcagcgcacacggcagattctcgtgcctgacctgcacgtcgaggta
agcgcgtctcacttctggcccacgtacgcgacccgacaggaatgggagcaggtgtccatc
cgtctgcaggagatgatcatcgccgacgccgcgcgccgcatgaacgtgagcccgaaggac
ttcacggaaaaggagaaggagggcattcttctgggcaagagaatggccaatgtggagatt
cagcaggaggagatgaaggagatcgaggccatgcggcgcacaaaactggcagagacgcag
acggtcaacgttgtcacaaacagcggcgacgtcgtaaagcgcaaggtgaaggccgccttc
gactttggagcgacggcgttgaacaacaactggcgaccccgctccttggccgatgccgcc
tttcttgacgagaacactcccatcaccttcgacgccgccggcgccaccggggcaagcgac
cagctcatcttctctgaggacgcgattcagaagctgctggcgtgctgcgacgttaaggtt
cagtgctgcgcgtacatgtttggccatgcgctgcccgactcgccaaacatcaaggaggtg
ctgtgtgtcatgattccgccgcagttcgggacggctgtcgaggcccgcacgccaccacgc
attccgtttgacgcggcagcactgcaggaggcgaacctgtccttcttgggactcatgagg
attggcgaaagcgaggcgcagctgacctcgcacgacctcgccctccaggcgcgtgcgctg
atcgcgaacgaggggatggtgccgcaagggtttgtgactgccgtcctggagatgtcggaa
gagggagtgatggcgcggtgctacagcactaccgcggacggcattgcatgggcgcagagt
gagcacgagcggctgctgaagaggactccggaggcgacggacccatccttctcctccccg
tgccgcggcaccctttcctcggaggctcgtagcttcttcctggtaccggcggatcgggtc
tggaactacttcttcaagggggcactgtggcgcgagaacaccgagtacgacgtcgtcgtc
gacgtgccgttgcccttcttccatgcgctgcaccgcccagaccacttccttaacttcact
cgcatcggtgacggcgccgaggtggtggatgagacggacccaaacgacgtgttcggcaac
gaggccgggctggcaggtgattga
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integrated database retrieval system
